View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_82 (Length: 297)
Name: NF1297_low_82
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 40888981 - 40888724
Alignment:
| Q |
30 |
tttgcaaccagtgcggtggttcaataactgatttttaaattaccggttagagaagttaaacacttagacggaaccacccaatgaaatggttcacagtttg |
129 |
Q |
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| T |
40888981 |
tttgcaaccagtgcggtggttcaataactgatttttaaattaccggttagagaagttaaacacttagacggaaccacccaatgaaatggttcacagtttg |
40888882 |
T |
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| Q |
130 |
accagtcagactaatccagtctgatctaattttcatattcttaaatatagttttttatacaggggaataactatcagcctattccgttttctcttttcta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888881 |
accagtcagactaatccagtctgatctaattttcatattcttaaatatagttttttattcaggggaataactatcagcctattccgttttctcttttcta |
40888782 |
T |
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| Q |
230 |
aatatacattccttgcatactatctacaagaattattaacaatcgcaatttgtctgtg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40888781 |
aatatacattccttgcatactatctacaagaattattaacaattgcaatttgtctgtg |
40888724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 44140211 - 44139954
Alignment:
| Q |
30 |
tttgcaaccagtgcggtggttcaataactgatttttaaattaccggttagagaagttaaacacttagacggaaccacccaatgaaatggttcacagtttg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
44140211 |
tttgcaaccagtgcggtggttcaataactgatttttaaattaccggttagagaagttaaagacttagactgaaccacccaatgaaatggttcacagtttg |
44140112 |
T |
|
| Q |
130 |
accagtcagactaatccagtctgatctaattttcatattcttaaatatagttttttatacaggggaataactatcagcctattccgttttctcttttcta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44140111 |
accagtcagactaatccagtctgatctaattttcatattcttaaatatagttttttattcaggggaataactatcagcctattccgttttctcttttcta |
44140012 |
T |
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| Q |
230 |
aatatacattccttgcatactatctacaagaattattaacaatcgcaatttgtctgtg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44140011 |
aatatacattccttgcatactatctacaagaattattaacaattgcaatttgtctgtg |
44139954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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