View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_92 (Length: 280)
Name: NF1297_low_92
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_92 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 41 - 222
Target Start/End: Original strand, 34156765 - 34156946
Alignment:
| Q |
41 |
cacagagcctaaacgcagttgtattatctccattgtgcatagagcccggttgnnnnnnnnnnnnnnncttatcctataatgcttagctatttgcatcgtt |
140 |
Q |
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| T |
34156765 |
cacagagcctaaacgcagttgtattatctccattgtgcatagagcccggttgtttttctagttttttcttatcctataatgcttagctatttgcatcgtt |
34156864 |
T |
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| Q |
141 |
ttgagttgtttatcgtcaatgcttgcgaagcgagtatgtttggagcctcaaccttgtgaaaaagatgacatcatacgagaag |
222 |
Q |
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| T |
34156865 |
ttgagttgtttatcgtcaatgcttgcgaagcgagtatgtttggagcctcgaccttgtgaaaaagatgacatcagacgagaag |
34156946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 7187157 - 7187240
Alignment:
| Q |
132 |
tgcatcgttttgagttgtttatcgtcaatgcttgcgaagcgagtatgtttggagcctcaaccttgtgaaaaagatgacatcata |
215 |
Q |
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| T |
7187157 |
tgcattgttttgacttatttatcatcaatgcttgcagcgtaagtgtttttggagtctcaaccttgtgaaaaagatgacaccata |
7187240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 8513611 - 8513504
Alignment:
| Q |
108 |
cttatcctataatgcttagctatttgcatcgttttgagttgtttatcgtcaatgcttgcgaagcgagtatgtttggagcctcaaccttgtgaaaaagatg |
207 |
Q |
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| T |
8513611 |
cttatcctattatgcttagctatttacatagttttgacttgtttatcatcaatgcttgcagtgtgagtgtgtttggagcctcaaccttgtaaaaaagatg |
8513512 |
T |
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| Q |
208 |
acatcata |
215 |
Q |
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| T |
8513511 |
acaccata |
8513504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 47911368 - 47911451
Alignment:
| Q |
132 |
tgcatcgttttgagttgtttatcgtcaatgcttgcgaagcgagtatgtttggagcctcaaccttgtgaaaaagatgacatcata |
215 |
Q |
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| T |
47911368 |
tgcattgttttgacttatttatcatcaatgcttgcagcgtaagtgtttttggagtctcaaccttgtgaaaaagatgacaccata |
47911451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 8513678 - 8513634
Alignment:
| Q |
41 |
cacagagcctaaacgcagttgtattatctccattgtgcatagagc |
85 |
Q |
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| T |
8513678 |
cacatagcctaaacgcagctgtattgtctccattgcgcatagagc |
8513634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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