View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_96 (Length: 275)
Name: NF1297_low_96
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_96 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 49 - 269
Target Start/End: Complemental strand, 40819539 - 40819319
Alignment:
| Q |
49 |
ttttttgtcttattttcatgatattgttttaggtggtcaattatagctgctcaattaccaggaggaactgataatgatatcaaaaactactggaacacaa |
148 |
Q |
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| T |
40819539 |
ttttttgtcttattttcatgatattgttttaggtggtcaattatagctgctcaattaccaggaagaactgataatgatatcaaaaactactggaacacaa |
40819440 |
T |
|
| Q |
149 |
aactaaagaagaaactcatgaatcttcttcctcaatctcataacacagttttaccatatctaacctcttcttcatttccttctcattgcacctcctattt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40819439 |
aactaaagaagaaactcatgaatcttcttcctcaatctcataacacagttttaccatatctaacctcttcttcatttccttctcattgcacctcctattt |
40819340 |
T |
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| Q |
249 |
caaccaaacaccaacaaacac |
269 |
Q |
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| T |
40819339 |
caaccaaacaccaacaaacac |
40819319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 21174544 - 21174634
Alignment:
| Q |
78 |
taggtggtcaattatagctgctcaattaccaggaggaactgataatgatatcaaaaactactggaacacaaaactaaagaagaaactcatg |
168 |
Q |
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| T |
21174544 |
taggtggtcaattatagcagctcaattaccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaagaaaaaactcatg |
21174634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 40254076 - 40253991
Alignment:
| Q |
79 |
aggtggtcaattatagctgctcaattaccaggaggaactgataatgatatcaaaaactactggaacacaaaactaaagaagaaact |
164 |
Q |
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| T |
40254076 |
aggtggtccattatagcagcgcaattaccaggacgaacggataatgatataaagaactattggaacacaaagttgaagaagaaact |
40253991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 5113857 - 5113925
Alignment:
| Q |
78 |
taggtggtcaattatagctgctcaattaccaggaggaactgataatgatatcaaaaactactggaacac |
146 |
Q |
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||||||||| || ||||| || |||||||||||| |||| ||||||||||| || |||||||||||||| |
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| T |
5113857 |
taggtggtctatcatagcagcacaattaccaggacgaacggataatgatataaagaactactggaacac |
5113925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 34358259 - 34358338
Alignment:
| Q |
79 |
aggtggtcaattatagctgctcaattaccaggaggaactgataatgatatcaaaaactactggaacacaaaactaaagaa |
158 |
Q |
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|||||||| ||||||| || |||||||||||| |||| ||||||||| | ||||| |||||||||| ||||||||||| |
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| T |
34358259 |
aggtggtcctttatagcagcacaattaccaggaagaacagataatgatgtgaaaaatcactggaacactaaactaaagaa |
34358338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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