View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298-Insertion-1 (Length: 741)
Name: NF1298-Insertion-1
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 234 - 737
Target Start/End: Complemental strand, 30901129 - 30900625
Alignment:
| Q |
234 |
ctgttgggctatgaagcacggacagtcacacggcactgctaatttattcacgtgtcttgtgtccatattcgtgtgacacctcttcgattaaaagtgtcca |
333 |
Q |
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| T |
30901129 |
ctgttgggccatgaagcacggacagtgacacggcactgctaatgtattcacgtgtgttgtgtccatattcgtgtgacacgtcttcgattaaaagtgtcca |
30901030 |
T |
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| Q |
334 |
tgctacatagcttattggacattcttaatttagagaaactttaaatattatattgtttgccttgttttgaggggaatctgatgaaatgtgttttcatggc |
433 |
Q |
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| T |
30901029 |
tgctacatagcttattggacattcttaatttagagaaactttaaatattatattgtttgccttgttttgaggggaatctgatgaaatgtgttttcatggc |
30900930 |
T |
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| Q |
434 |
agtgaacaatcctaagaaatctggaccgatgctgaatgagacatttttgggattgctttatccaattgaaaattacaaagtgtgagtgcatttgtagtat |
533 |
Q |
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| T |
30900929 |
agtgaacaatcctaagaaatctggaccgatgctgaatgagacgtttttgggattgctttatccaattgaaaattacaaagtgtgagtgcatttgtagtat |
30900830 |
T |
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| Q |
534 |
gtggaaaaattttatttgatttatatataatccaacaatgaaaagtgggagattttcatttttgatctgtgatgtcatttgcagttatggatatctgact |
633 |
Q |
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| T |
30900829 |
gtggaaattttttatttgatttatatataatccaacaatgaaaagtgggagattttcatttttgatctgtgatgtcatttgcagttatggatatctgact |
30900730 |
T |
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| Q |
634 |
aacacaaaggtgaaatttatcttggtgaccacggatattgatgttaaagatgcagatgtgag-aatgtgagtatcagtagaagtttatggttttctttca |
732 |
Q |
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| T |
30900729 |
aacacaaaggtgaaatttatcttggtgaccacggatattgatgttaaagatgcagatgtgagaaatgtgagtatcagtagaagttgatggttttctttca |
30900630 |
T |
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| Q |
733 |
tttcc |
737 |
Q |
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| T |
30900629 |
tttcc |
30900625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 30901344 - 30901165
Alignment:
| Q |
8 |
gtccattgctcgctcgatgtcgtcgatgaacgaggtatgttcactatgcgatcatgctcattttgattactagnnnnnnn----atttggagatttaggt |
103 |
Q |
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| T |
30901344 |
gtccattgctcgctcgatgtcgtcgacgaacgaggtaggttcacttttcgatcatgctcattttgattactagtttttttttttatttggagatttaggt |
30901245 |
T |
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| Q |
104 |
aactttgttttacctatcaatttgttggttgctgcaaatggttgagatctttgtacccatagtttagacaaaatttcaat |
183 |
Q |
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| T |
30901244 |
aactttgttttatctattaatttgttgggtgctgcaaatagttgagatctttgtacccttagtttagacaaaatttcaat |
30901165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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