View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298-Insertion-12 (Length: 75)
Name: NF1298-Insertion-12
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 64; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 6496223 - 6496156
Alignment:
| Q |
8 |
catacttcatatcatattgttgatacataccaatgaccatgttaaatccacggttttcaagctcacga |
75 |
Q |
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| T |
6496223 |
catacttcatatcatattattgatacataccaatgaccatgttaaatccacggttttcaagctcacga |
6496156 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 44211828 - 44211783
Alignment:
| Q |
30 |
atacataccaatgaccatgttaaatccacggttttcaagctcacga |
75 |
Q |
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| T |
44211828 |
atacataccaatgaccatgttaaatccacggttctcaagttcacga |
44211783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 44221946 - 44221901
Alignment:
| Q |
30 |
atacataccaatgaccatgttaaatccacggttttcaagctcacga |
75 |
Q |
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| T |
44221946 |
atacataccaagttccatgtcaaatccacggttttcaagctcacga |
44221901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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