View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298-Insertion-3 (Length: 673)
Name: NF1298-Insertion-3
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298-Insertion-3 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 281 - 673
Target Start/End: Original strand, 29378394 - 29378783
Alignment:
| Q |
281 |
tgctagcacttctccttctccttgccttgtcctcacaaccactatttgtatcatctaaaacttcactcaatcaagtgcttgacatatcggggaagaagct |
380 |
Q |
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| T |
29378394 |
tgctagcacttctccttctccttgccttgtcctcacaaccactatttgtatcatctaaaacttcactcaatcaagtgcttgacatatcggggaagaagct |
29378493 |
T |
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| Q |
381 |
tcgaactgattccgattactacatcattcccgcgaatggtggagatatttcccttgaaagttctattggtgaatcttgccctcttcatgtagtagttgtg |
480 |
Q |
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| T |
29378494 |
tcgaactgattccgattactacatcattcccgcgaatggtggagatatttcccttgaaagttctattggtgagtcttgccctcttcatgtagtagttgtg |
29378593 |
T |
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| Q |
481 |
aagcatagacaaggtctagggtttcctctaaggttggcaccagttaaaggtgagattcgtgtctccactgatctcaatattatgctaggtaatgctgatg |
580 |
Q |
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| T |
29378594 |
aaacatagacaaggtctagggtttcctctaaggttggcaccagttaaaggtgatattcgtgtctccactgatctcaatattatgctaggtaattatgatg |
29378693 |
T |
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| Q |
581 |
ataggtgttcttataactattcagtagtgtggaagattgatccttcttctaaggaagcaacatttgtgactactaatggtatattaggtcacc |
673 |
Q |
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| T |
29378694 |
ataggtgtcc---taactattcagtagtgtggaagattgatccctattctaaggaagcaacatttgtgaccactaatggcatattaggtcacc |
29378783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 29378121 - 29378329
Alignment:
| Q |
9 |
caagtactatatagcacctagagattttgaagacacaattcttagatatgcgactttaaatacaacaaacatataattaatgttggccaattgtgtagtc |
108 |
Q |
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| T |
29378121 |
caagtactatatagcacctagagattttgaagacacaattcttaaatatgcgacttcaaatacaacaaacatataattaatgttggccaattgtgtagtc |
29378220 |
T |
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| Q |
109 |
caaatcattgaccatgaatctagcgtgagtatttttatgaatccatagatagcaatcgtagtagcaactaactataaataattgatgatatatctcccat |
208 |
Q |
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| T |
29378221 |
caaatcattgaccataaatctagcatgagta-ttttatgaatccatagatagcaatcgtagtagcaactaactataaataattgatgatatatttcccat |
29378319 |
T |
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| Q |
209 |
caactccatt |
218 |
Q |
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| T |
29378320 |
caactccatt |
29378329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 281 - 410
Target Start/End: Original strand, 29385682 - 29385811
Alignment:
| Q |
281 |
tgctagcacttctccttctccttgccttgtcctcacaaccactatttgtatcatctaaaacttcactcaatcaagtgcttgacatatcggggaagaagct |
380 |
Q |
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|||||||| ||||||||||| |||| |||||||| |||||| || ||| |||| || || |||||| | ||||||| |||||| |||||| |||||||| |
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| T |
29385682 |
tgctagcatttctccttctctttgcattgtcctcgcaaccattacttggatcagctgaagcttcacccgatcaagtcattgacacatcgggcaagaagct |
29385781 |
T |
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| Q |
381 |
tcgaactgattccgattactacatcattcc |
410 |
Q |
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| T |
29385782 |
tcgagctgatacaaattactacatcattcc |
29385811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 605 - 665
Target Start/End: Original strand, 29386045 - 29386105
Alignment:
| Q |
605 |
tagtgtggaagattgatccttcttctaaggaagcaacatttgtgactactaatggtatatt |
665 |
Q |
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| T |
29386045 |
tagtgtggaagattgatcctttttctaaagaagaaacatttgtgaccactaatggtgtatt |
29386105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 29385885 - 29385921
Alignment:
| Q |
451 |
gaatcttgccctcttcatgtagtagttgtgaagcata |
487 |
Q |
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| T |
29385885 |
gaatcttgccctcttgatgtagtagttgtgaaacata |
29385921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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