View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298-Insertion-4 (Length: 684)
Name: NF1298-Insertion-4
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 8 - 684
Target Start/End: Complemental strand, 1704105 - 1703428
Alignment:
| Q |
8 |
agttggtcatatctctggaggcctcttcaaccctgctgttaccatcacctgggctatttttcgccgaatcacgattaaagaggctcctttgtacattctt |
107 |
Q |
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| T |
1704105 |
agttggtcatatctctggaggcctcttcaaccctgctgttaccatcacctgggctatttttcgccgaatcacgattaaagaggctcctttgtacattctt |
1704006 |
T |
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| Q |
108 |
gctcaattacttggttctacacttgcaagtgtaacgttatctttaatgtttgacatcacacccgaatcttatttcggaactgtaccggtcggatcaaact |
207 |
Q |
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| T |
1704005 |
gctcaattacttggttctacacttgcaagtgtaacgttatctttaatgtttgacatcacacccgaatcatatttcggaactgtaccggtcggatcaaact |
1703906 |
T |
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| Q |
208 |
gtcaatctttagtgttagaaatcattatcagtctcctcttaatgtttgtcatttcagctgttactacagatgatagagcggtcgatgactccgcaagtat |
307 |
Q |
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| T |
1703905 |
gtcaatctttagtgttagaaatcattatcagttttctcttaatgtttgtcatttcagctgttactacagatgatagagcggtcgatgactcggcaagtat |
1703806 |
T |
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| Q |
308 |
tgcagttggaatgacattaacattgaatctttttattgctgggcctgtatcaggtgcatctatgaacccagcaagaagtattggtcctgcaattgtgata |
407 |
Q |
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| T |
1703805 |
tgcggttggaatgacattaacattgaatctttttattgctgggcctgtgtcaggtgcatctatgaacccagcaagaagtattggtcctgcaattgtgata |
1703706 |
T |
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| Q |
408 |
catatttacaaaggattgtggatatatatagttggtccaattattggagccatagctggagcacttgcatataactttctaagatcagcatacaaaccaa |
507 |
Q |
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| T |
1703705 |
catatttacaaaggattgtggatatatatagttggtccaattattggagccatagctggagcacttgcctataactttctaagatcagcatacaaaccaa |
1703606 |
T |
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| Q |
508 |
cttcagagacaacagcagacaagccaacttcagaattaacaacagacaagccaccttcagagaacattgtgtaggtttgatttaagggtgcataatcatt |
607 |
Q |
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| T |
1703605 |
cttcagagacaatagcagacaagccaacttcagaattaacaacagacaagccaacttcagagaacattgtgtaggtttgatttaagggtgcataatcatt |
1703506 |
T |
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| Q |
608 |
ttccttattttgtagttgagtactttgcttttgttt-atggaagttgtcctaattagggttttaaactgctttggttt |
684 |
Q |
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| T |
1703505 |
ttccttattttgtagttgagtgctttgcttttgtttaatggaaattttcctaattagggttttaaactgctttggttt |
1703428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 4e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 349 - 493
Target Start/End: Original strand, 34019862 - 34020006
Alignment:
| Q |
349 |
ggcctgtatcaggtgcatctatgaacccagcaagaagtattggtcctgcaattgtgatacatatttacaaaggattgtggatatatatagttggtccaat |
448 |
Q |
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| T |
34019862 |
ggcctgtatcaggaggatctatgaacccagcaagaagtattggtcctgcacttatagtacatgtttacaaaggactatggatatatgtggttggtccaat |
34019961 |
T |
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| Q |
449 |
tattggagccatagctggagcacttgcatataactttctaagatc |
493 |
Q |
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| T |
34019962 |
tgttggagctatagctggagcaattgcatataactttcttagatc |
34020006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 34019487 - 34019577
Alignment:
| Q |
175 |
cttatttcggaactgtaccggtcggatcaaactgtcaatctttagtgttagaaatcattatcagtctcctcttaatgtttgtcatttcagc |
265 |
Q |
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| T |
34019487 |
cttattttggaaccgtaccagttggatcaaatggccagtctttagttgtagaaatcatcatcagttttctcttaatgtttgtcatttcagc |
34019577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 34019181 - 34019227
Alignment:
| Q |
9 |
gttggtcatatctctggaggcctcttcaaccctgctgttaccatcac |
55 |
Q |
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| T |
34019181 |
gttggtcatatctctggaggacatttcaaccctgctgttaccatcac |
34019227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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