View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298-Insertion-5 (Length: 970)
Name: NF1298-Insertion-5
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 886; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 886; E-Value: 0
Query Start/End: Original strand, 8 - 964
Target Start/End: Original strand, 251524 - 252476
Alignment:
| Q |
8 |
ttaactaccttaaccctatatttgaattgtgttaaccgcctaatttatcggcaaaattttatgtcaaatgagctgatagataaatctactagtttaaccg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
251524 |
ttaactaccttaaccctatatttgaattgtgttaaccgcctaatttatcggcaaaattttatgtcaaatgagctgattgataaatctactagtttaaccg |
251623 |
T |
|
| Q |
108 |
catattaatttagcaactcttaatctactagatttactattcagaacttacaatacaattcatcatattatacaactagcatgtgaaattgtggtagaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251624 |
catattaatttagcaactcttaatctactagatttactattcagaacttacaatacaattcatcatattatacaactagcatgtgaaattgtggtagaat |
251723 |
T |
|
| Q |
208 |
aaaaccaagatccataccatcgtacaccataccacggttctgaaaatcatctgttggattaattccaacatgaatcctgctgaaaataggaagcatcttc |
307 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251724 |
aaaaccaagatccataccatcgtacaccacaccacggttctgaaaatcatctgttggattaattccaacatgaatcctgctgaaaataggaagcatcttc |
251823 |
T |
|
| Q |
308 |
acttaatatacaactgcatcactttcggtaactgttaccttatcaagcatcctagcatgtctcatttatacgagtcatctggaaattttgtccactactt |
407 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251824 |
acttaatatacaactacatcactttcagtaactgttaccttatcaagcatcctagcatgtctcatttatacgagtcatctggaaattttgtccactactt |
251923 |
T |
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| Q |
408 |
tagtgactagcttattatcattattgaactaagataaaatgaccatatttagcatgcatgagataataatttatttgaattaaagatgagatacactaaa |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251924 |
tagtgactagcttattatcattattgaactaagataaaatgaccatatttagcatgcatgagataataatttatttgaattaaagatgagatacactaaa |
252023 |
T |
|
| Q |
508 |
tacttttgcaaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgtttactacttttgtttcagttttg |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
252024 |
tacttttgcaaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgtttactacttttgtttcagttttg |
252123 |
T |
|
| Q |
608 |
aaaataacggactcaacggcccagaactgaaaggactggttccttatgattttggatgctaagaaaggcagaagaattcgacaactggcctcctcagatt |
707 |
Q |
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| T |
252124 |
aaaataacggactcaacggcccagaactgaaaggactggttccttatgattttggatgctaagaaaggcagaagaattcgacaactggcc-------atc |
252216 |
T |
|
| Q |
708 |
gctatgaagaggcttctttacttgggcagttagcagcatcggagatgtatgattgctgcaaaatgaatctaagtaggacacacatgtacgtccaaatata |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
252217 |
gctatgaagaggcttctttacttgggcagttagcagtatcggagatgtatgattgctgcaaaatgaatctaagtaggacacacatgtacgtccaaatata |
252316 |
T |
|
| Q |
808 |
tgtaatagtaaataagatgatattagcatctgtctctggttgcagactgcatagcaagactaggatcatgttaattgttaagtaaacgtgcctcgtggta |
907 |
Q |
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| T |
252317 |
tgtaatagtaaataagatgatattagcatctgtctctggttgcagactgcatagcaagactaggatcatgttaattgttaagtaaacgtgcctcgtggta |
252416 |
T |
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| Q |
908 |
actattttccttttg-ttttatataatcacataaagc-aaaggcttt-atattttgtttt |
964 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
252417 |
actattttccttttgtttttatataatcacataaagcaaaaggctttaatattttgtttt |
252476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 764 - 915
Target Start/End: Original strand, 35608117 - 35608259
Alignment:
| Q |
764 |
tgcaaaatgaatctaagtaggacacacatgtacgtccaaatatatgtaatagtaaataagatgatattagcatctgtctctggttgcagactgcatagca |
863 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||| || | ||| ||||| |||||||||||| || |||||||||||||| || |
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| T |
35608117 |
tgcaaaatga-tctaagtaggacacacatgtacgtccaaatatacgtgacagttaataaaatgatattagca--------tgattgcagactgcataaca |
35608207 |
T |
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| Q |
864 |
agactaggatcatgttaattgttaagtaaacgtgcctcgtggtaactatttt |
915 |
Q |
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|||||||||||||||||||||||| |||| ||| |||||| |||||||||| |
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| T |
35608208 |
agactaggatcatgttaattgttagataaatgtgtctcgtgttaactatttt |
35608259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 517 - 586
Target Start/End: Original strand, 35607991 - 35608060
Alignment:
| Q |
517 |
aaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgttt |
586 |
Q |
| |
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||||||||| |||||||||| | |||||||||| |||||||||||| |||||||| | |||||||||||| |
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| T |
35607991 |
aaagtatctcacttcttagaattgtcgcccaaatttgtattcataacatttgaagttaaagtatatgttt |
35608060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 764 - 915
Target Start/End: Original strand, 28911658 - 28911799
Alignment:
| Q |
764 |
tgcaaaatgaatctaagtaggacacacatgtacgtccaaatatatgtaatagtaaataagatgatattagcatctgtctctggttgcagactgcatagca |
863 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| || |||||||||| |||| ||||||||||| || |
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| T |
28911658 |
tgcaaaatgaatctaagtaggacaca--tgtacgtccaaatatatgtaacgattaataaaattatattagcat--------ggttacagactgcataaca |
28911747 |
T |
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| Q |
864 |
agactaggatcatgttaattgttaagtaaacgtgcctcgtggtaactatttt |
915 |
Q |
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|||||||||||| ||||||||||| |||| ||| ||||||||||||||||| |
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| T |
28911748 |
agactaggatcacgttaattgttagataaatgtgtctcgtggtaactatttt |
28911799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 517 - 599
Target Start/End: Original strand, 28911566 - 28911648
Alignment:
| Q |
517 |
aaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgtttactacttttgttt |
599 |
Q |
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|||||| || |||||||||| |||||||||||| |||||||||||| |||||||||| |||||||| |||||||||| ||||| |
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| T |
28911566 |
aaagtacctcacttcttagaatagtcgcccaaatttgtattcataacatttgaagctaaagtatatatttactacttgtgttt |
28911648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 517 - 601
Target Start/End: Original strand, 26512047 - 26512131
Alignment:
| Q |
517 |
aaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgtttactacttttgtttca |
601 |
Q |
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| T |
26512047 |
aaagtatctcatttcttagaatagtcgcccaaatttgtattcataacatttgaaactaatgtatatgtttactacttgtgtttca |
26512131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 767 - 836
Target Start/End: Original strand, 26512142 - 26512209
Alignment:
| Q |
767 |
aaaatgaatctaagtaggacacacatgtacgtccaaatatatgtaatagtaaataagatgatattagcat |
836 |
Q |
| |
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||||||||||||||| ||||||| ||| |||| |||||||||||| || ||||| ||||||||||||| |
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| T |
26512142 |
aaaatgaatctaagtgggacaca--tgtccgtctaaatatatgtaacagataataaaatgatattagcat |
26512209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 597 - 665
Target Start/End: Complemental strand, 48316805 - 48316737
Alignment:
| Q |
597 |
tttcagttttgaaaataacggactcaacggcccagaactgaaaggactggttccttatgattttggatg |
665 |
Q |
| |
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||||||||||||||||||| |||||| || || |||||||||||||| ||||| |||||||||||||| |
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| T |
48316805 |
tttcagttttgaaaataacagactcagtggtccggaactgaaaggacttgttccgtatgattttggatg |
48316737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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