View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1298-Insertion-6 (Length: 218)

Name: NF1298-Insertion-6
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1298-Insertion-6
NF1298-Insertion-6
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-212)||(8983-9179)
[»] chr7 (1 HSPs)
chr7 (13-212)||(16420271-16420467)
[»] chr8 (1 HSPs)
chr8 (19-210)||(5538304-5538496)
[»] chr3 (1 HSPs)
chr3 (35-193)||(19932296-19932453)
[»] chr1 (4 HSPs)
chr1 (35-193)||(18901508-18901672)
chr1 (35-106)||(51784714-51784783)
chr1 (154-193)||(51784794-51784833)
chr1 (180-212)||(18901455-18901487)
[»] chr5 (2 HSPs)
chr5 (35-178)||(37940370-37940512)
chr5 (180-212)||(37940550-37940582)


Alignment Details
Target: scaffold0003 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 9179 - 8983
Alignment:
Q  13 aaccgattactaataattcttccactaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacacg 112  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9179 aaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatctttatttccacacg 9080  T
Q  113 acaatcacttcctttgctctatgcctccttttgtttttcctactttcctgctaatcttattatatattactctaataaatactagctactaatatctagt 212  Q
     ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  9079 ccaatcacttcctttgctctatgcttccttttg-ttttcctactttcttgctaatcttat--tatattactctaataaatactagctagtaatatctagt 8983  T

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Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 16420467 - 16420271
Alignment:
Q  13 aaccgattactaataattcttccactaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacacg 112  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16420467 aaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatctttatttccacacg 16420368  T
Q  113 acaatcacttcctttgctctatgcctccttttgtttttcctactttcctgctaatcttattatatattactctaataaatactagctactaatatctagt 212  Q
     ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  16420367 ccaatcacttcctttgctctatgcttccttttg-ttttcctactttcttgctaatcttat--tatattactctaataaatactagctagtaatatctagt 16420271  T

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Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 5538304 - 5538496
Alignment:
Q  19 ttactaataattcttccactaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacacgacaatc 118  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5538304 ttactaataattctcccactagcttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacacg-caatc 5538402  T
Q  119 acttcc-tttgctctatgcctccttttgtttttcctactttcctgctaatcttat--tatatattactctaataaatactagctactaatatcta 210  Q
    |||||| |||||||||||| |||||||| ||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| |||||||||    
T  5538403 acttccttttgctctatgcttccttttg-ttttcctactttcttgctaatcttattatatatattactctaataaatactagctagtaatatcta 5538496  T

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Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 19932453 - 19932296
Alignment:
Q  35 cactaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacacgacaatcacttcctttgctctat 134  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||| ||||||    
T  19932453 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccactagtcaatcagttccttttctctat 19932354  T
Q  135 gcctccttttgtttttcctactttcctgctaatcttattatatattactctaataaata 193  Q
    || ||||||||  |||||||||||  ||||||||||||||||||||||| |||||||||    
T  19932353 gcttccttttg-ctttcctactttattgctaatcttattatatattactttaataaata 19932296  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 18901672 - 18901508
Alignment:
Q  35 cactaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatg-------tttatttccacacgacaatcacttccttt 127  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||  | |||||| |||||||    
T  18901672 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttaatgtttatttccaccagtcaatcagttccttt 18901573  T
Q  128 gctctatgcctccttttgtttttcctactttcctgctaatcttattatatattactctaataaata 193  Q
     |||||||| ||||||||  |||||||||||| ||||||||||||||||||||||| |||||||||    
T  18901572 tctctatgcttccttttg-ctttcctactttcttgctaatcttattatatattactttaataaata 18901508  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 51784714 - 51784783
Alignment:
Q  35 cactaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttc 106  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  51784714 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgt--atgtttatttc 51784783  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 51784794 - 51784833
Alignment:
Q  154 actttcctgctaatcttattatatattactctaataaata 193  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  51784794 actttcttgctaatcttattatatattactttaataaata 51784833  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 18901487 - 18901455
Alignment:
Q  180 tactctaataaatactagctactaatatctagt 212  Q
    ||||||||||||||||||||| |||||||||||    
T  18901487 tactctaataaatactagctagtaatatctagt 18901455  T

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Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 37940370 - 37940512
Alignment:
Q  35 cactaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacacgacaatcacttcctttgctctat 134  Q
    |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  |  ||||| |||||||   ||||    
T  37940370 cactaacttatttcctaaaaatatggaacatagtggaaaatgagattgggaagaaacgtggatgtttatttccactagttaatcagttcctttttcctat 37940469  T
Q  135 gcctccttttgtttttcctactttcctgctaatcttattatata 178  Q
    || || |||||  || ||||||||| ||||||||||||||||||    
T  37940470 gcttctttttg-cttacctactttcttgctaatcttattatata 37940512  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 37940550 - 37940582
Alignment:
Q  180 tactctaataaatactagctactaatatctagt 212  Q
    ||||||||||||||||||||| |||||||||||    
T  37940550 tactctaataaatactagctagtaatatctagt 37940582  T

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