View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1298-Insertion-7 (Length: 324)

Name: NF1298-Insertion-7
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1298-Insertion-7
NF1298-Insertion-7
[»] chr5 (4 HSPs)
chr5 (181-317)||(38554525-38554661)
chr5 (18-100)||(38555084-38555166)
chr5 (94-158)||(38554684-38554748)
chr5 (17-100)||(6486029-6486112)
[»] chr1 (3 HSPs)
chr1 (17-84)||(10863002-10863069)
chr1 (17-80)||(52681619-52681682)
chr1 (17-88)||(52685741-52685812)
[»] chr4 (1 HSPs)
chr4 (17-79)||(11959872-11959934)
[»] chr2 (1 HSPs)
chr2 (17-71)||(31306614-31306668)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 38554661 - 38554525
Alignment:
Q  181 agatccaacaagcaatttgttcatttgtcgatgca--attcatcaaaagtattgttcacatcagcgttgttcgcatcacgaacaccgttcatcatgatca 278  Q
    |||||||||||||  ||||||||||||||||||||  ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  38554661 agatccaacaagc--tttgttcatttgtcgatgcactattcatcgaaagtattgttcacatcagcattgtttgcatcacgaacaccgttcatcatgatca 38554564  T
Q  279 ttgtccacattcgcgcattgctcccctcgttagtactgt 317  Q
    |||||||||||||||||||| || |||||||||||||||    
T  38554563 ttgtccacattcgcgcattgttcacctcgttagtactgt 38554525  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 38555166 - 38555084
Alignment:
Q  18 agttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactctcaaattatacagtgatttcta 100  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  38555166 agttgattaattgtatgctaccctatatagggagcaacattttcattgaaataatatactctcaaattatatagtaatttcta 38555084  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 38554748 - 38554684
Alignment:
Q  94 atttctatatggcatcaaagcccattattttgcttctatgtaaaccatgtgcgtcgtcgtaacaa 158  Q
    ||||||||||||||||||||||| | ||||||||||||  |||||| | | ||||||||||||||    
T  38554748 atttctatatggcatcaaagcccttgattttgcttctacataaaccctatacgtcgtcgtaacaa 38554684  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 6486029 - 6486112
Alignment:
Q  17 gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactctcaaattatacagtgatttcta 100  Q
    |||||||||| ||| |||||  |||||||| |||| | |||| ||||||||||||  ||||||||| ||||| ||| |||||||    
T  6486029 gagttgattagttgtattctctcctataaaaggagtaccattctcattgaaataaactactctcaagttatagagtaatttcta 6486112  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 10863069 - 10863002
Alignment:
Q  17 gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactctcaaat 84  Q
    |||||||||| ||| |||||  |||||||| |||||| |||| |||||||||||||||||||||||||    
T  10863069 gagttgattagttgtattctctcctataaaaggagcaccattctcattgaaataatatactctcaaat 10863002  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 52681682 - 52681619
Alignment:
Q  17 gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactctc 80  Q
    |||||||||||||| |||||  |||||||| |||||| |||||||||||||||||  |||||||    
T  52681682 gagttgattaattgtattctctcctataaaaggagcaccattttcattgaaataaattactctc 52681619  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 52685812 - 52685741
Alignment:
Q  17 gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactctcaaattata 88  Q
    |||||||||| ||| |||||  ||||| || |||||| |||||||||||||||||  ||||||||| |||||    
T  52685812 gagttgattagttgtattctctcctattaaaggagcaccattttcattgaaataaattactctcaagttata 52685741  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 11959934 - 11959872
Alignment:
Q  17 gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactct 79  Q
    |||||||||| ||| |||||  |||||||| |||||| ||||||||||||||||| |||||||    
T  11959934 gagttgattagttgtattctctcctataaatggagcaccattttcattgaaataaaatactct 11959872  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 31306614 - 31306668
Alignment:
Q  17 gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataa 71  Q
    |||||||||| |||||||||  |||||||| |||||| |||| ||||||||||||    
T  31306614 gagttgattagttgcattctctcctataaaaggagcaccattctcattgaaataa 31306668  T

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