View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12980_high_2 (Length: 457)
Name: NF12980_high_2
Description: NF12980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12980_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 55616 - 55197
Alignment:
| Q |
19 |
ggattggcctttttctggctacattttctatggtttcagcagctgttatggagaaaaagagaagggatgcagctgtgaacctgaaccaaactctgtccat |
118 |
Q |
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| T |
55616 |
ggattggcctttttctggctacattttctatggtttcagcagctgttatggagaaaaagagaagggatgcagctgtgaacctgaaccaaactctgtccat |
55517 |
T |
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| Q |
119 |
attttggattacaccacaattcataatatttggtttgtcagagatgtttactgcagttggcctcattgagttcttctacaaacagtccttgaaagggatg |
218 |
Q |
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| T |
55516 |
attttggattacaccacaattcataatatttggtttgtcagagatgtttactgcagttggcctcattgagttcttctacaaacagtccttgaaagggatg |
55417 |
T |
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| Q |
219 |
cagacattcttcactgccatcacatattgctcctattcatttggattttatctcagctcactattggtttctttggtgaataaaatcacttcaacttcta |
318 |
Q |
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| T |
55416 |
cagacattcttcactgccatcacatattgctcctattcatttggattttatctcagctcactattggtttctttggtgaataaaatcacttcaacttcta |
55317 |
T |
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| Q |
319 |
gtggtggtggtggttggcttcatgacaacaatctgaacaaagacaaacttgaccttttctattggttactagctgtccttagcttcctcaacttcatcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55316 |
gtggtggtggtggttggcttcatgacaacaatctgaacaaagacaaacttgaccttttctattggttactagctgtccttagcttcctcaacttcatcaa |
55217 |
T |
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| Q |
419 |
ctatctcttctggtccagat |
438 |
Q |
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| T |
55216 |
ctatctcttctggtccagat |
55197 |
T |
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