View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12980_low_1 (Length: 800)
Name: NF12980_low_1
Description: NF12980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12980_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 719; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 19 - 795
Target Start/End: Original strand, 2280810 - 2281586
Alignment:
| Q |
19 |
gttctaggagttgaaatgagaatatctgactgaagaattagcaattgtatgatccttaagatttgacatgtgannnnnnnatataaaattgtaaaatgct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2280810 |
gttctaggagttgaaatgagaatatctgactgaagaattagcaattgtatgatccttaagatttgacatgtgatttttttatataaaattgtaaaatgct |
2280909 |
T |
|
| Q |
119 |
agtatttatcattttttgttagnnnnnnntatgcatataggaaacagcaacgataatatttactactttcactgattttatgtaaataattaaaaatgaa |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2280910 |
agtatttatcattttttgttagaaaaaaatatgcatataggaaacagcaacgataatatttactactttcactgattttatgtaaataattaaaaatgaa |
2281009 |
T |
|
| Q |
219 |
ataacgatcctaagatgatgttcttatggattaatttcttcgaaactaaactttgatcaatgatgttgttattagtgactatttttctgtctcattggca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2281010 |
ataacgatcctaagatgatgttcttatggattaatttcttcgaaactaaactttgatcaatgatgttgttattagtgactatttttctgtctcattggca |
2281109 |
T |
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| Q |
319 |
tgcaaatatggtgagaaattgtacatttcaacaaactcacttcatgttctttatcctcattttcaatatcaaatcctttagatagaaagaacgatcacga |
418 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2281110 |
tgcaaatatggtgagaaagtgtacatttcaacaaactcacttcatgttctttatcctcatttttaatatcaaatcctttagatagaaagaacgatcacga |
2281209 |
T |
|
| Q |
419 |
tgaaagtcaaccaaaaaacaaagctgccttattgcttccttcttgttctctgcaaggctagccagttcatcatccttctgtttcagtttcttttccaatt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2281210 |
tgaaagtcaaccaaaaaacaaagctgccttattgcttccttcttgttctctgcaaggctagccagttcatcatccttctgtttcagtttcttttccaatt |
2281309 |
T |
|
| Q |
519 |
tccccattttcctttcaaactgtgtcactgttttcatcaaattcattttctcccctccatgcttgctcacatcagcttctgatttccacaccttcgcttt |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2281310 |
tccccattttcctttcaaactgtgtcactgttttcatcaaattcattttctcccctccatgcttgctcacatcagcttctgatttccacaccttcgcttt |
2281409 |
T |
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| Q |
619 |
tagcgtcttaatttcatcttcataatcagcaatttttgcaccaagcattttgttctcttcctcatacttttgctttgtcaatttgtaactgtgtttgttt |
718 |
Q |
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| T |
2281410 |
tagcgtcttaatttcatcttcataatcagcaatttttgcaccaagcattttgttctcttcctcatacttttgctttgtcaatttgtaactgtgtttgttt |
2281509 |
T |
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| Q |
719 |
tcgttattcagttgttctgctacgtggatcctccgatgcaatatatgtatattatcttccattttctgatgatgtcc |
795 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2281510 |
tcgttattcagttgttctgctacgtggatcctccgatgcaatatatgtatattatcttccattttctgtcgatgtcc |
2281586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 416 - 536
Target Start/End: Complemental strand, 41786102 - 41785982
Alignment:
| Q |
416 |
cgatgaaagtcaaccaaaaaacaaagctgccttattgcttccttcttgttctctgcaaggctagccagttcatcatccttctgtttcagtttcttttcca |
515 |
Q |
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|||||||| ||||| | ||||||||||| |||||||||||| |||| ||||| |||||||| ||| || |||||||| | |||||| |||||||||| |
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| T |
41786102 |
cgatgaaactcaacaaccaaacaaagctgtcttattgcttccctcttcttctccccaaggctatccaaatcctcatccttttctttcagattcttttcca |
41786003 |
T |
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| Q |
516 |
atttccccattttcctttcaa |
536 |
Q |
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|||||||| |||| |||||| |
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| T |
41786002 |
ttttccccactttcttttcaa |
41785982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 659 - 785
Target Start/End: Complemental strand, 41785568 - 41785442
Alignment:
| Q |
659 |
ccaagcattttgttctcttcctcatacttttgctttgtcaatttgtaactgtgtttgttttcgttattcagttgttctgctacgtggatcctccgatgca |
758 |
Q |
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||||| || |||||||||||||| ||| || |||||| |||||| ||||| |||||| || || |||| |||||||||||||||||||||| | |||| |
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| T |
41785568 |
ccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgca |
41785469 |
T |
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| Q |
759 |
atatatgtatattatcttccattttct |
785 |
Q |
| |
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| | | ||||| ||||||||||||| |
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| T |
41785468 |
acaagcggatattgtcttccattttct |
41785442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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