View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12980_low_12 (Length: 244)
Name: NF12980_low_12
Description: NF12980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12980_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 48505586 - 48505810
Alignment:
| Q |
4 |
aaaaaggggaaaatacaaatctctttgttaattatatctaaaaagggaaaatcaaaaccataatcatttatatattagcatccaaacagagccaaactat |
103 |
Q |
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| T |
48505586 |
aaaaaggggaaaatacaaatctctttgttaattatatctaaaaggggaaaatcaaaaccataagcatttatatattagcatcaaaacagagccaaactat |
48505685 |
T |
|
| Q |
104 |
atttatacataagcatttatcatgtttatccaagagctcactttatatcataatacaataccattaatctcacattctattgcattcaattagggtttca |
203 |
Q |
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| T |
48505686 |
atttatacataagcatttatcatgtttatccaagagcccactttatatcataatacaataccattaatctcacattctattgcattcaattagggtttca |
48505785 |
T |
|
| Q |
204 |
attagggaaaatacaagctgctaac |
228 |
Q |
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|||||| ||||||||| |||||||| |
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| T |
48505786 |
attaggaaaaatacaacctgctaac |
48505810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 48504938 - 48504997
Alignment:
| Q |
77 |
attagcatccaaacagagccaaactatatttatacataagcatttatcatgtttatccaa |
136 |
Q |
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| T |
48504938 |
attagcatcaaaacagagccaaaccatatttattgacaagcatttatcatgtttatccaa |
48504997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 48505834 - 48505873
Alignment:
| Q |
189 |
tcaattagggtttcaattagggaaaatacaagctgctaac |
228 |
Q |
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| T |
48505834 |
tcaattagggtttcaattaaggaaaatacaacctgctaac |
48505873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 48504834 - 48504867
Alignment:
| Q |
104 |
atttatacataagcatttatcatgtttatccaag |
137 |
Q |
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| T |
48504834 |
atttatacataagcatttatcatgtatatccaag |
48504867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 40928182 - 40927985
Alignment:
| Q |
1 |
ttcaaaaaggggaaaatacaaatctctttgttaattatatctaaaaagggaaaatcaaaaccataatcatttatatattagcatccaaacagagccaaac |
100 |
Q |
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| T |
40928182 |
ttcaaaaaggggaaaatacaaatctctttgttaattatatctaaaaggggaaaatcaaaaccataagcatttatatattagcatcaaaacagagccaaac |
40928083 |
T |
|
| Q |
101 |
tatatttatacataagcatttatcatgtttatccaagagctcactttatatcataatacaataccattaatctcacattctattgcattcaattaggg |
198 |
Q |
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| T |
40928082 |
tatatttatacataagcatttatcatgtttatccaatagctcactttatatcataatacaataccattaatctcacattctattgcattcaattaggg |
40927985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 40928827 - 40928768
Alignment:
| Q |
77 |
attagcatccaaacagagccaaactatatttatacataagcatttatcatgtttatccaa |
136 |
Q |
| |
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||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||| |
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| T |
40928827 |
attagcatcaaaacagagccaaaccatatttattgacaagcatttatcatgtttatccaa |
40928768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 40928931 - 40928898
Alignment:
| Q |
104 |
atttatacataagcatttatcatgtttatccaag |
137 |
Q |
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||||||||||||||||||||||||| |||||||| |
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|
| T |
40928931 |
atttatacataagcatttatcatgtatatccaag |
40928898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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