View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12980_low_14 (Length: 239)
Name: NF12980_low_14
Description: NF12980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12980_low_14 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 27479420 - 27479640
Alignment:
| Q |
18 |
gtttcagacatgttttcttcattatcatggtgctgatgtccagctagtatcgacctaacgaatagatagactaatctgcattatttcaagggggtgcatt |
117 |
Q |
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| T |
27479420 |
gtttcagacatgttttcttcattatcatggtgctgatgtccagctagtatcgac-taacgaatagatagactaatctgcattatttgaagggggtgcatt |
27479518 |
T |
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| Q |
118 |
atctacgatgaaattaatttgatgttgacccatgtgtaagtcctccaaaacaataccatgtgatcattcatatggacttgtctcccatagttctcatgac |
217 |
Q |
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| T |
27479519 |
atctaccatgaaattaatttgatgttgacccatgtgtaagtcctccaaaacaataccatgtgatcattcatatggacttgtctcccatagttctcatgac |
27479618 |
T |
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| Q |
218 |
ttacatccatctcatggctctc |
239 |
Q |
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| T |
27479619 |
ttgcatccatctcatggctctc |
27479640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 27506304 - 27506083
Alignment:
| Q |
18 |
gtttcagacatgttttcttcattatcatggtgctgatgtccagctagtatcgacctaacgaatagatagactaatctgcattatttcaagggggtgcatt |
117 |
Q |
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| T |
27506304 |
gtttcagacatgttttcttcattatcaaagtgctgatgtccagctagtatcgacctaacgaacggatagactaatctgcattatttgaagggggtgcatt |
27506205 |
T |
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| Q |
118 |
atctacgatgaaattaatttgatgttgacccatgtgtaagtcctccaaaacaataccatgtgatcattcatatggacttgtctcccatagttctcatgac |
217 |
Q |
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| T |
27506204 |
atctaccatgaaattagtttgatgttgacccatgtgtaagtcctccaaaacaaaaccatgtgatctttcatatggacttgtctcccatagttttcatgac |
27506105 |
T |
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| Q |
218 |
ttacatccatctcatggctctc |
239 |
Q |
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| T |
27506104 |
tctaatccatctcgtggctctc |
27506083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 27486587 - 27486722
Alignment:
| Q |
102 |
ttcaagggggtgcattatctacgatgaaattaatttgatgttgacccatgtgtaagtcctccaaaacaataccatgtgatcattcatatggacttgtctc |
201 |
Q |
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| T |
27486587 |
ttcaaggtggtgcattatctaccatgaaattaatttgattttgacccatgtggaagtcctccaaaacaataacatgtgatctttcatatggacttgtctc |
27486686 |
T |
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| Q |
202 |
ccatagttctcatgacttacatccatctcatggctctc |
239 |
Q |
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| T |
27486687 |
ccaaagttttcatgcct--catccatctcatggctctc |
27486722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 27486480 - 27486569
Alignment:
| Q |
18 |
gtttcagacatgttttcttcattatcatggtgctgatgtccagctagtatcgacctaacgaatagatagactaatctgcattatttcaag |
107 |
Q |
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| T |
27486480 |
gtttcagacatgttttcttcattattaaagtgttgatgtccatcttgtatcgacctaacgaacggatagactaatctgaattatttcaag |
27486569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 27524080 - 27524038
Alignment:
| Q |
20 |
ttcagacatgttttcttcattatcatggtgctgatgtccagct |
62 |
Q |
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| T |
27524080 |
ttcagacatgttttcttcattatgataatgctgatgtccagct |
27524038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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