View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12980_low_3 (Length: 451)
Name: NF12980_low_3
Description: NF12980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12980_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 82 - 435
Target Start/End: Original strand, 27435881 - 27436237
Alignment:
| Q |
82 |
attattatcccctttttt-cagtaatcgtaaccactgtataaagtctcactcagcacccaacttaacatatcataacataccatactacgtacga--tca |
178 |
Q |
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||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||| |
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| T |
27435881 |
attataatcccctttttttcagtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactaccatcaagttca |
27435980 |
T |
|
| Q |
179 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttctctgttcttttcctgttcttctctgtcgacttggcattctcgatgccgaa |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27435981 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttctctgtccttttcctgttcttctctgtcgacttggcattctcgatgccgaa |
27436080 |
T |
|
| Q |
279 |
cgatagagaagatccaataatccagcaggtggtcgacaagggaggagctgagtatcaatttaatgaattcaagcaaaggtttggtaaggtttattcctcc |
378 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27436081 |
ggatagagaagatccaataatccagcaggtggtcgataagggaggagctgagtatcaatttaatgaattcaagcaaaggtttggtaaggtttattcctcc |
27436180 |
T |
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| Q |
379 |
aaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaag |
435 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27436181 |
aaagatgaacatgattataggttcaacgtcttcaagtctaaccttcaccgtgctaag |
27436237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 27944311 - 27944729
Alignment:
| Q |
1 |
cctagaaaaatcctaactagtatcagtttccctttaaccgtcaactaattccacatgtcatgcatctatttgttatca----ttcattattatccccttt |
96 |
Q |
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| T |
27944311 |
cctagaaaaatcctaacta---tcagtttccctttaaccgtcaactaattccacgtgtcatgcatctatttgttatcactcattcattattatccccttt |
27944407 |
T |
|
| Q |
97 |
tttcagtaatcgtaaccactgtataaagtctcactcagcacccaacttaacatatcataacataccatactacgtacgatcaagtcagaagaagaagtca |
196 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || | | |
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| T |
27944408 |
tttcagtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactacg----atcaagcca----------tga |
27944493 |
T |
|
| Q |
197 |
tgaatcatcgtaaccaaactttcatgctgttctctgttcttttcctgttcttctctgtcgacttggcattctcgatgccgaacgatagagaagatccaat |
296 |
Q |
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|||||| ||||| | ||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
27944494 |
tgaatc---gtaacaagactctcatgctgttctctgtccttttcctgttcttttctgtcgacttggcattctcgacgccaaacgaccgagaagatccaat |
27944590 |
T |
|
| Q |
297 |
aatccagcaggtggtcgacaagggaggagctgagtatcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattat |
396 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27944591 |
aatccagcaggtggtcgataagggaggagctgagtatcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattat |
27944690 |
T |
|
| Q |
397 |
aggttcaatgtcttcaagtctaaccttcaccgtgctaag |
435 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27944691 |
aggttcaatgtcttcaagtctaaccttcaccgtgctaag |
27944729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 203 - 435
Target Start/End: Complemental strand, 27550231 - 27549999
Alignment:
| Q |
203 |
atcgtaaccaaactttcatgctgttctctgttcttttcctgttcttctctgtcgacttggcattctcgatgccgaacgatagagaagatccaataatcca |
302 |
Q |
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| T |
27550231 |
atcgtaacaagactctcatgctgttctctgtccttttcctgttcttttctgtcgacttggcattctcgacgccaaacgaccgagaagatccaataatcca |
27550132 |
T |
|
| Q |
303 |
gcaggtggtcgacaagggaggagctgagtatcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttc |
402 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27550131 |
gcaggtggtcgataagggaggagctgagcatcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttc |
27550032 |
T |
|
| Q |
403 |
aatgtcttcaagtctaaccttcaccgtgctaag |
435 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
27550031 |
aacgtcttcaagtctaaccttcaccgtgctaag |
27549999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 27550579 - 27550501
Alignment:
| Q |
43 |
aactaattccacatgtcatgcatctatttgttatcattcattattatccccttttttcagtaatcgtaaccactgtataaag |
124 |
Q |
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|||||||||||| |||| |||||||||||||||||| ||||||||||||| || || ||||||||||||||| ||||||| |
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| T |
27550579 |
aactaattccacgtgtcctgcatctatttgttatcactcattattatccctttatt---gtaatcgtaaccactatataaag |
27550501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 26764904 - 26764982
Alignment:
| Q |
357 |
gtttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaag |
435 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||| || ||||||||||| |
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| T |
26764904 |
gtttgggaaggtttattcttccaaggatgaacatgattacaggtttaaaatcttcaagtctaatctgaaccgtgctaag |
26764982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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