View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12980_low_5 (Length: 406)
Name: NF12980_low_5
Description: NF12980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12980_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 36164667 - 36164278
Alignment:
| Q |
18 |
aattaagatggaaaataaacattatcatgtaaggctccattgccgctagcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaatgtca |
117 |
Q |
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| T |
36164667 |
aattaagatggaaagtaaacattatcatgtaaggctccattgccgct----taagatggaaagcagaactgatttgaagagtaaaagtgtgaaaatgtca |
36164572 |
T |
|
| Q |
118 |
taacattatcatgtaaggctttgattgtttac------------tagtttcatattatcagccattctcaaacttagtaatagttctacattacttagtg |
205 |
Q |
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| T |
36164571 |
taacattatcatgtaaggctttgattgtttacatttgtttactatagtttcatattatcagccattctcaaacttagtaatagttctacatcacttagtg |
36164472 |
T |
|
| Q |
206 |
ccatttaattacactaaaacgtatgataattttgtattaaagaaagcatgagcctatctgcattgaaattttttactcttaaatgtagcttctaannnnn |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36164471 |
acatttaattacactaaaacgtatgataattttgtattaaagaaagcatgagcctatctgcattgaaattttttactcttaaaagtagcttctaattttt |
36164372 |
T |
|
| Q |
306 |
nnccctctcaatcaaacaaaacatcgatttaaatccttattttccttttccttccctcctctcaagtaaaatatcttccgtccttttccctttg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36164371 |
ttccctctcaatcaaacaaaacatcgatttaaatccttattttccttttccttccctcctctcaagtaaaatatcttctgtccttttccctttg |
36164278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 67 - 271
Target Start/End: Complemental strand, 3649227 - 3649013
Alignment:
| Q |
67 |
cttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaatgtcataacattatcatgtaaggctttg----------attgtttactagtttc |
156 |
Q |
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| T |
3649227 |
cttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaatgtcataacattatcatgtaaggctttgtttgtttacatttgtttactagtttc |
3649128 |
T |
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| Q |
157 |
atattatcagccattctcaaacttagtaatagttctacattacttagtgccatttaattacactaaaacgtatga-taa-ttttgtattaaagaaagcat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||| | | |||||||||| ||| |||||||||||||||| ||| |
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| T |
3649127 |
atattatcagccattctcaaacttagtaatagttcttcatcacttggtaacatttaatt--aatcaaacgtatgactaatttttgtattaaagaaatcat |
3649030 |
T |
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| Q |
255 |
gagcctatctgcattga |
271 |
Q |
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|||| | |||||||||| |
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| T |
3649029 |
gagcgtgtctgcattga |
3649013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 3657141 - 3657014
Alignment:
| Q |
142 |
ttgtttactagtttcatattatcagccattctcaaacttagtaatagttctacattacttagtgccatttaattacactaaaacgtatgataattttgta |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||| | |||||||||||||||| ||||| |
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| T |
3657141 |
ttgtttactagtttcatattatcagccattctcaaacttagtaatagttgtacatcacttggtgacatttaatt--aataaaacgtatgataatcttgta |
3657044 |
T |
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| Q |
242 |
ttaaagaaagcatgagcctatctgcattga |
271 |
Q |
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||||||||| || |||||| |||||||||| |
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| T |
3657043 |
ttaaagaaatcacgagcctgtctgcattga |
3657014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 3659601 - 3659555
Alignment:
| Q |
67 |
cttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
113 |
Q |
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||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
3659601 |
cttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
3659555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 3653336 - 3653291
Alignment:
| Q |
66 |
gcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaa |
111 |
Q |
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|||||| |||||||||||||||||||||||||||||| | |||||| |
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| T |
3653336 |
gcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaa |
3653291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 3644479 - 3644443
Alignment:
| Q |
231 |
ataattttgtattaaagaaagcatgagcctatctgca |
267 |
Q |
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|||||||||||||| ||||||||||||||| |||||| |
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| T |
3644479 |
ataattttgtattatagaaagcatgagcctctctgca |
3644443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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