View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12980_low_7 (Length: 297)
Name: NF12980_low_7
Description: NF12980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12980_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 35045138 - 35044835
Alignment:
| Q |
4 |
caaagggcatcatggtatggttccgtcagtggattttatcccatttttattcaattaaggtttgaagtgaaataaaataagagaatgtggtagttgtgat |
103 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045138 |
caaagggcatcatggtatggttcagtcagtggattttatcacatttttattcaattaaggtttgaagtgaaataaaataagagaatgtggtagttgtgat |
35045039 |
T |
|
| Q |
104 |
taaagagtagttagaaagctagaagtgagttatttaag---------------------ttattcaagtcacctattctcaatttaagttgtttttaagt |
182 |
Q |
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|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| ||| |
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| T |
35045038 |
tagagagtagttagaaagctagaagtgagttatttaagttttttttttcttgagaaaacttcttcaagtcacctattctcaatttaagatgttttaaagg |
35044939 |
T |
|
| Q |
183 |
tgatttaataaattaattgatgtcaagttactcaaagtgcatttggaaattattggtttgattaacttatttatttaatccgttcatatttctgtcttga |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
35044938 |
tgatttaataaattaattgatgtcaagttactcaaagtgcatttggaaattattggtttcattaacttttttatttaatccgttcatatttctgtcttga |
35044839 |
T |
|
| Q |
283 |
tgat |
286 |
Q |
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|||| |
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| T |
35044838 |
tgat |
35044835 |
T |
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