View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12980_low_9 (Length: 260)
Name: NF12980_low_9
Description: NF12980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12980_low_9 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 12280393 - 12280522
Alignment:
| Q |
1 |
actctctgcatgacataacatctttcatgattctttatctttcatgtataaactgatatgtgtttgttaagtgtttaattaagttgttaatctatacaag |
100 |
Q |
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| T |
12280393 |
actctctgcatgacataacatctttcatgattctttatctttcatgtataaactgatatgtgtttgttaagtgtttaattaagttgttaatctatacaag |
12280492 |
T |
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| Q |
101 |
gccttgatctggtatatctttcgaattact |
130 |
Q |
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| T |
12280493 |
gccttgatctggtatatctttcgaattact |
12280522 |
T |
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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 23258254 - 23258165
Alignment:
| Q |
170 |
actgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactgtcacccacagttc |
260 |
Q |
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| T |
23258254 |
actgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttc |
23258165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 23276132 - 23276043
Alignment:
| Q |
170 |
actgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactgtcacccacagttc |
260 |
Q |
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| T |
23276132 |
actgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttc |
23276043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 27542898 - 27542821
Alignment:
| Q |
165 |
tactgactgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggc |
243 |
Q |
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| T |
27542898 |
tacttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggc |
27542821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 11136751 - 11136839
Alignment:
| Q |
172 |
tgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactgtcacccacagttc |
260 |
Q |
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| T |
11136751 |
tgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaggcgctatcacctacagttc |
11136839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 8985519 - 8985390
Alignment:
| Q |
126 |
ttactgattgtagtgcaacttgagtagtaatcaaggaat----tactgactgtggttatgattgttgttttttgcagtcctgtatttacacacatggctg |
221 |
Q |
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| T |
8985519 |
ttactgattgtagtgcaatatgagaaataatcaaggaatattatacttactatgattatgatttttgtttttt-cagtcctgtatttacacacatggctg |
8985421 |
T |
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| Q |
222 |
gaagttcttcggtgtggaaggcactgtcacc |
252 |
Q |
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| T |
8985420 |
gaagttcttcggtgtggaaggccctatcacc |
8985390 |
T |
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