View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12981_high_10 (Length: 334)
Name: NF12981_high_10
Description: NF12981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12981_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 67 - 246
Target Start/End: Complemental strand, 30677533 - 30677355
Alignment:
| Q |
67 |
atagttgagaaatgttagggtcacacctttggacacactcttttaacacacacccacaacaatcatagctcaccacatcattattttctctctcactagt |
166 |
Q |
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| T |
30677533 |
atagttgagaaatgctaggatcacacctttggacacactcttttaacacacacccacaccaatcatagctgatcacatccttattttttttctcactagt |
30677434 |
T |
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| Q |
167 |
ttgactgcaactttgtcttctccaagtttaaacgcatcagaacaaagaaaaacaacaagcttcatggcccattctccttc |
246 |
Q |
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| T |
30677433 |
ttgactgcaac-ttgtcttctccaagtttaaacgcatcagaacatagaaaaacaacaagcttcatggcccattctccttc |
30677355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 30677336 - 30677252
Alignment:
| Q |
238 |
ttctccttcggattcaatctgtcactccttccaatttgtatcacacaaactatgtcgtacttctcccatctgaccccatcccgtct |
323 |
Q |
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| T |
30677336 |
ttctccttcggattcagtctgtcgctccttccaatttgtatcacacaaactatgtcgtacttctcccatctga-cccatcccgtct |
30677252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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