View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12981_high_11 (Length: 326)

Name: NF12981_high_11
Description: NF12981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12981_high_11
NF12981_high_11
[»] chr8 (15 HSPs)
chr8 (22-168)||(38613611-38613757)
chr8 (165-293)||(6311097-6311227)
chr8 (167-293)||(7290082-7290211)
chr8 (168-293)||(36979184-36979308)
chr8 (168-293)||(4760242-4760366)
chr8 (168-293)||(30655448-30655572)
chr8 (168-274)||(18853356-18853457)
chr8 (168-287)||(18870734-18870849)
chr8 (189-272)||(25328456-25328540)
chr8 (189-272)||(39785002-39785086)
chr8 (159-293)||(10689309-10689442)
chr8 (204-293)||(33037972-33038063)
chr8 (189-272)||(35745213-35745298)
chr8 (189-263)||(10684452-10684528)
chr8 (166-242)||(19752609-19752683)
[»] chr5 (21 HSPs)
chr5 (167-293)||(1457317-1457446)
chr5 (168-293)||(27444771-27444899)
chr5 (168-293)||(43592080-43592208)
chr5 (168-293)||(43598525-43598653)
chr5 (168-293)||(43604017-43604145)
chr5 (168-293)||(43609509-43609637)
chr5 (168-293)||(27449615-27449743)
chr5 (185-293)||(30631227-30631336)
chr5 (189-293)||(28807731-28807837)
chr5 (189-293)||(15044512-15044616)
chr5 (168-233)||(31180079-31180142)
chr5 (189-272)||(37556802-37556887)
chr5 (189-272)||(37561624-37561709)
chr5 (168-293)||(38191983-38192105)
chr5 (168-293)||(38219208-38219330)
chr5 (189-272)||(2785197-2785282)
chr5 (189-272)||(31397171-31397256)
chr5 (189-272)||(31402028-31402113)
chr5 (207-272)||(33791158-33791223)
chr5 (168-224)||(35387474-35387527)
chr5 (207-272)||(33768021-33768086)
[»] chr4 (11 HSPs)
chr4 (167-293)||(51520257-51520386)
chr4 (189-293)||(9224562-9224668)
chr4 (189-293)||(9229349-9229455)
chr4 (167-293)||(56146867-56146996)
chr4 (189-293)||(3813846-3813953)
chr4 (189-293)||(45347973-45348079)
chr4 (189-293)||(45357452-45357558)
chr4 (189-293)||(18855549-18855655)
chr4 (168-293)||(24741748-24741871)
chr4 (168-293)||(29760449-29760572)
chr4 (189-272)||(5732486-5732568)
[»] scaffold0135 (1 HSPs)
scaffold0135 (189-293)||(35217-35323)
[»] chr7 (17 HSPs)
chr7 (189-293)||(12396735-12396841)
chr7 (189-293)||(12406155-12406261)
chr7 (189-272)||(24024506-24024589)
chr7 (189-293)||(4866553-4866659)
chr7 (166-272)||(2057763-2057866)
chr7 (189-272)||(31109761-31109844)
chr7 (168-293)||(20357713-20357837)
chr7 (168-293)||(1533608-1533730)
chr7 (189-293)||(19992135-19992241)
chr7 (189-293)||(21812395-21812501)
chr7 (168-293)||(21645818-21645940)
chr7 (168-243)||(2479148-2479221)
chr7 (164-243)||(47263485-47263562)
chr7 (189-263)||(16879894-16879970)
chr7 (189-263)||(16884750-16884826)
chr7 (189-263)||(24261511-24261587)
chr7 (189-263)||(24266390-24266466)
[»] chr6 (15 HSPs)
chr6 (189-293)||(11856795-11856901)
chr6 (189-293)||(14737732-14737838)
chr6 (189-293)||(14742591-14742697)
chr6 (189-272)||(22010875-22010958)
chr6 (189-293)||(6438324-6438429)
chr6 (189-293)||(28184325-28184434)
chr6 (189-272)||(28155749-28155832)
chr6 (168-293)||(5674934-5675057)
chr6 (168-293)||(30125960-30126084)
chr6 (189-272)||(6005239-6005324)
chr6 (207-272)||(5343322-5343387)
chr6 (207-272)||(33330625-33330690)
chr6 (189-272)||(33336122-33336207)
chr6 (189-272)||(16838566-16838651)
chr6 (168-243)||(31936398-31936470)
[»] chr3 (14 HSPs)
chr3 (189-293)||(22173350-22173456)
chr3 (166-293)||(7167049-7167174)
chr3 (189-272)||(18656256-18656338)
chr3 (168-293)||(2671752-2671876)
chr3 (168-271)||(40372986-40373085)
chr3 (167-293)||(8477170-8477295)
chr3 (168-272)||(8739254-8739354)
chr3 (168-272)||(9091492-9091592)
chr3 (189-272)||(8512037-8512122)
chr3 (189-272)||(8516917-8517002)
chr3 (168-293)||(28504022-28504145)
chr3 (189-272)||(2677266-2677351)
chr3 (189-272)||(2673110-2673195)
chr3 (189-272)||(10207755-10207840)
[»] chr2 (10 HSPs)
chr2 (189-272)||(44312802-44312885)
chr2 (166-293)||(11099093-11099219)
chr2 (189-293)||(32246607-32246714)
chr2 (189-272)||(39812166-39812250)
chr2 (168-293)||(14291295-14291419)
chr2 (168-293)||(9296567-9296691)
chr2 (189-272)||(19344243-19344327)
chr2 (189-272)||(19349101-19349185)
chr2 (168-293)||(25403443-25403565)
chr2 (168-293)||(25398305-25398427)
[»] chr1 (10 HSPs)
chr1 (189-293)||(25445246-25445352)
chr1 (189-293)||(39445322-39445428)
chr1 (189-293)||(44024029-44024135)
chr1 (189-267)||(41386571-41386650)
chr1 (189-272)||(41398060-41398144)
chr1 (189-293)||(1055168-1055274)
chr1 (207-272)||(43988644-43988709)
chr1 (204-265)||(24787564-24787624)
chr1 (168-293)||(24202932-24203054)
chr1 (168-224)||(19359079-19359132)
[»] scaffold0127 (1 HSPs)
scaffold0127 (189-267)||(34132-34211)
[»] scaffold0464 (1 HSPs)
scaffold0464 (189-293)||(185-291)
[»] scaffold0355 (2 HSPs)
scaffold0355 (189-272)||(9818-9902)
scaffold0355 (189-272)||(65-143)
[»] scaffold0978 (1 HSPs)
scaffold0978 (167-291)||(404-528)
[»] scaffold0479 (1 HSPs)
scaffold0479 (189-250)||(13171-13233)
[»] scaffold0197 (2 HSPs)
scaffold0197 (189-272)||(19343-19428)
scaffold0197 (189-263)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (189-272)||(149134-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (189-272)||(2429-2514)
[»] scaffold0188 (1 HSPs)
scaffold0188 (168-293)||(24208-24331)
[»] scaffold0087 (1 HSPs)
scaffold0087 (168-243)||(44174-44247)
[»] scaffold0009 (1 HSPs)
scaffold0009 (189-263)||(182152-182228)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 38613611 - 38613757
Alignment:
Q  22 catcatcatcatctctggtcccaggtttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 121  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613611 catcatcatcttctctggtcccagctttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 38613710  T
Q  122 tgcacaaacaccgttgccaaggtttgaatctgctgaattttgcttct 168  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  38613711 tgcacaaacaccgttgccaaggtttgaatcagctcgattttgcttct 38613757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 165 - 293
Target Start/End: Original strand, 6311097 - 6311227
Alignment:
Q  165 ttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 264  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6311097 ttctgttgtgaatccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 6311196  T
Q  265 aacaaca--aaaccagccctagactagtgta 293  Q
    |||||||  ||| ||||||||||||||||||    
T  6311197 aacaacaacaaagcagccctagactagtgta 6311227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 7290211 - 7290082
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 265  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||    
T  7290211 ctgttgtgaatccggttccaaactcacaccaatgaaataaacattgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaaacaa 7290112  T
Q  266 acaaca--aaaccagccctagactagtgta 293  Q
    ||||||  ||| ||||||||||||||||||    
T  7290111 acaacaacaaagcagccctagactagtgta 7290082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 36979184 - 36979308
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  36979184 tgttgtgaatccggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 36979280  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  36979281 acaacaaaaacagccctagactagtgta 36979308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 4760366 - 4760242
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| ||||||||||||||||| ||||||||  ||||| |||||||||||| || ||||||||||||||||||| | ||||||||||||||||  |    
T  4760366 tgttgtgaatccggttgaaactcacatcaatgaaa--aacaaagatgtgtggagctagagatagtggtaatcaatgagca-aaatggtttccaagcaaca 4760270  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  4760269 acaacaaaaacagccctagactagtgta 4760242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 30655448 - 30655572
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| ||||||||||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  30655448 tgttgtgaatccggttgaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 30655543  T
Q  266 acaac-aaaaccagccctagactagtgta 293  Q
    ||||| |||| ||||||||||||||||||    
T  30655544 acaacaaaaaacagccctagactagtgta 30655572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 18853457 - 18853356
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 267  Q
    |||||||| ||||||||||||||||||||| |||| |||    ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||    
T  18853457 tgttgtgaatccggttgaaactcacaccaacgaaacaaa----gatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaaac 18853363  T
Q  268 aacaaaa 274  Q
    |||||||    
T  18853362 aacaaaa 18853356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 18870849 - 18870734
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 267  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| |||| |||||||| |||||   |||||||||||||||||||    
T  18870849 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagataatggtaatctatgag-ttaaatggtttccaagcaaac 18870754  T
Q  268 aacaaaaccagccctagact 287  Q
    |||||||   ||||||||||    
T  18870753 aacaaaaaacgccctagact 18870734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 25328540 - 25328456
Alignment:
Q  189 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  25328540 tcacaacaatgaaataaatcaatgatgtgcggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 25328456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 39785086 - 39785002
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || |||||    
T  39785086 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaataacaa 39785002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 293
Target Start/End: Complemental strand, 10689442 - 10689309
Alignment:
Q  159 ttttgcttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttc 258  Q
    ||||| || ||||||| || ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||| |||||  | |||||||||    
T  10689442 ttttgattgtgttgtgttttcggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatctatgag-tctaatggtttc 10689346  T
Q  259 caagca--aacaacaaaaccagccctagactagtgta 293  Q
    ||||||  |||||||||| || ||||||  |||||||    
T  10689345 caagcaacaacaacaaaaacaaccctagtgtagtgta 10689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 293
Target Start/End: Complemental strand, 33038063 - 33037972
Alignment:
Q  204 aaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--aacaacaa-aaccagccctagactagtgta 293  Q
    |||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |||||||| || ||||||||||||||||||    
T  33038063 aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaacaacaacaataaacagccctagactagtgta 33037972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 35745213 - 35745298
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  35745213 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 35745298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 10684528 - 10684452
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  10684528 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 10684452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 19752683 - 19752609
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaat 242  Q
    |||||||||| ||||||  ||| |||||||||||||| |||||| ||||||||||||||  |  |||||||||||||    
T  19752683 tctgttgtgaatccggtaaaaa-tcacaccaatgaaa-aaacaaagatgtgtggagcaaaaggaagtggtaatcaat 19752609  T

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Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 1457446 - 1457317
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 265  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  1457446 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 1457347  T
Q  266 acaaca--aaaccagccctagactagtgta 293  Q
    ||||||  ||| ||||||||||||||||||    
T  1457346 acaacaacaaagcagccctagactagtgta 1457317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 27444771 - 27444899
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  27444771 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27444870  T
Q  267 caaca--aaaccagccctagactagtgta 293  Q
    |||||  | | ||||||||||||||||||    
T  27444871 caacaacatagcagccctagactagtgta 27444899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 43592080 - 43592208
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  43592080 tgttgtgaatccggttccaaagtcacatcaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaa 43592179  T
Q  267 caaca--aaaccagccctagactagtgta 293  Q
    |||||  ||| ||||||||||||||||||    
T  43592180 caacaacaaagcagccctagactagtgta 43592208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 43598525 - 43598653
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  43598525 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43598624  T
Q  267 caaca--aaaccagccctagactagtgta 293  Q
    |||||  ||| ||||||||||||||||||    
T  43598625 caacaacaaagcagccctagactagtgta 43598653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 43604017 - 43604145
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  43604017 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43604116  T
Q  267 caaca--aaaccagccctagactagtgta 293  Q
    |||||  ||| ||||||||||||||||||    
T  43604117 caacaacaaagcagccctagactagtgta 43604145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 43609509 - 43609637
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  43609509 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43609608  T
Q  267 caaca--aaaccagccctagactagtgta 293  Q
    |||||  ||| ||||||||||||||||||    
T  43609609 caacaacaaagcagccctagactagtgta 43609637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 27449615 - 27449743
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  27449615 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatatgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27449714  T
Q  267 caaca--aaaccagccctagactagtgta 293  Q
    |||||  | | ||||||||||||||||||    
T  27449715 caacaacatagcagccctagactagtgta 27449743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 30631227 - 30631336
Alignment:
Q  185 aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--aacaacaaaaccagccct 282  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||  |||||||||| |||||||    
T  30631227 aaactcacacaaatgaaataaacaatgatgtgtggagcaagagatagtggtaatctatgagaacaaatggttttcaagcaacaacaacaaaa-cagccct 30631325  T
Q  283 agactagtgta 293  Q
    |||||||||||    
T  30631326 agactagtgta 30631336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 28807837 - 28807731
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  28807837 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 28807738  T
Q  287 tagtgta 293  Q
    |||||||    
T  28807737 tagtgta 28807731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 15044512 - 15044616
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||  ||| |||||||||||    
T  15044512 tcacaccaatgaaata--caatgacgtgtagagcaagtgatagtggtaatcaatgagaacaaatggtctccaaaccaacaacaacaaaacagccctagac 15044609  T
Q  287 tagtgta 293  Q
    |||||||    
T  15044610 tagtgta 15044616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 31180079 - 31180142
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtg 233  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  31180079 tgttgtgaatccggttgaaactcacaccaatgaa--taacaatgatgtgtggagcaagagatagtg 31180142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 37556887 - 37556802
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37556887 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37556802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 37561709 - 37561624
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37561709 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37561624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 38191983 - 38192105
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  38191983 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38192077  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  38192078 acaacaaaaacagccctagactagtgta 38192105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 38219208 - 38219330
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  38219208 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38219302  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  38219303 acaacaaaaacagccctagactagtgta 38219330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 2785197 - 2785282
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  2785197 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 2785282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 31397256 - 31397171
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  31397256 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31397171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 31402113 - 31402028
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  31402113 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31402028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 33791158 - 33791223
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  33791158 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33791223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 35387474 - 35387527
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 224  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  35387474 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 35387527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 33768021 - 33768086
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| |||||  ||||||   ||||||| ||||||||    
T  33768021 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatgacctccaagctaacaacaa 33768086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 51520257 - 51520386
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 265  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  51520257 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 51520356  T
Q  266 acaaca--aaaccagccctagactagtgta 293  Q
    ||||||  ||| ||||||||||||||||||    
T  51520357 acaacaacaaagcagccctagactagtgta 51520386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 9224668 - 9224562
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  9224668 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9224569  T
Q  287 tagtgta 293  Q
    |||||||    
T  9224568 tagtgta 9224562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 9229455 - 9229349
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  9229455 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9229356  T
Q  287 tagtgta 293  Q
    |||||||    
T  9229355 tagtgta 9229349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 56146996 - 56146867
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 265  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  56146996 ctgttgtgaatccggttccaaattcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaa 56146897  T
Q  266 acaaca--aaaccagccctagactagtgta 293  Q
    ||||||  ||| ||||||||||||||||||    
T  56146896 acaacaacaaagcagccctagactagtgta 56146867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 3813846 - 3813953
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 285  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||| ||| ||||||    
T  3813846 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtctccaagcaaacaacaacaaaacagtcctaga 3813945  T
Q  286 ctagtgta 293  Q
    ||||||||    
T  3813946 ctagtgta 3813953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 45348079 - 45347973
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||  ||| ||| |||||||    
T  45348079 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45347980  T
Q  287 tagtgta 293  Q
    |||||||    
T  45347979 tagtgta 45347973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 45357558 - 45357452
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||  ||| ||| |||||||    
T  45357558 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45357459  T
Q  287 tagtgta 293  Q
    |||||||    
T  45357458 tagtgta 45357452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 18855549 - 18855655
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  18855549 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 18855648  T
Q  287 tagtgta 293  Q
    |||||||    
T  18855649 tagtgta 18855655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 24741748 - 24741871
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| ||||||||||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  24741748 tgttgtgaatccggttgaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 24741843  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  24741844 acaacaaaaacagccctagactagtgta 24741871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 29760449 - 29760572
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||| | |  ||||||||||||||||  |    
T  29760449 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaat-aaacaaaatggtttccaagcaaca 29760545  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| || |||||||||||||||    
T  29760546 acaacaaaa-caaccctagactagtgta 29760572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 5732486 - 5732568
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  5732486 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaa 5732568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 35323 - 35217
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  35323 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 35224  T
Q  287 tagtgta 293  Q
    |||||||    
T  35223 tagtgta 35217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 12396735 - 12396841
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  12396735 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12396834  T
Q  287 tagtgta 293  Q
    |||||||    
T  12396835 tagtgta 12396841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 12406155 - 12406261
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  12406155 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12406254  T
Q  287 tagtgta 293  Q
    |||||||    
T  12406255 tagtgta 12406261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 24024589 - 24024506
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24024589 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 24024506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 4866553 - 4866659
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||  ||| ||| |||||||    
T  4866553 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgaggacaaatggtctccaagcaaacaacaacaaaacagtcctagac 4866652  T
Q  287 tagtgta 293  Q
    |||||||    
T  4866653 tagtgta 4866659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 2057763 - 2057866
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 265  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||    
T  2057763 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaa 2057859  T
Q  266 acaacaa 272  Q
    |||||||    
T  2057860 acaacaa 2057866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 31109844 - 31109761
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  31109844 tcacaccaatgaaataaacaatgatgtgtgcagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 31109761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 20357837 - 20357713
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc---a 264  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||||||||| |||||  |||||||| |||||||        
T  20357837 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagctaac 20357742  T
Q  265 aacaacaaaaccagccctagactagtgta 293  Q
    |||||||||| ||||||||||||||||||    
T  20357741 aacaacaaaaacagccctagactagtgta 20357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 1533730 - 1533608
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| ||||||| ||||||||||||||||||   |||| ||||||||||||||   |||||||||||||||||||| |||  |||||||||||  |    
T  1533730 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaagatgtgtggagcaaaatatagtggtaatcaatgagaaaaaa--gtttccaagcaaca 1533636  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    |||||||||||||||| || ||||||||    
T  1533635 acaacaaaaccagccccagtctagtgta 1533608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 19992135 - 19992241
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||  ||||||| || ||||||||  |    
T  19992135 tcacaccaatgaaataaaccaaagatgtgtggagcaggtgatagtgataatcaatgagaacaaatggcttccaagcttacaacaacaaacagccctaagc 19992234  T
Q  287 tagtgta 293  Q
    |||||||    
T  19992235 tagtgta 19992241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 21812501 - 21812395
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| ||||||| |||||||| |||||||| || ||||||||  |    
T  21812501 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcttccaagctaacaacaacaaacagccctaagc 21812402  T
Q  287 tagtgta 293  Q
    |||||||    
T  21812401 tagtgta 21812395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 21645818 - 21645940
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| |||||   |||  || ||||||||  |    
T  21645818 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaaaagggagtggtaatctatgag--taaagtgtctccaagcaaca 21645912  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||| ||||||||    
T  21645913 acaacaaaaacagccctagtctagtgta 21645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 2479148 - 2479221
Alignment:
Q  168 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 243  Q
    |||||||| |||||||||| | |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||    
T  2479148 tgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgtgtggagcaaagga-agtggtaatcaatg 2479221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 47263485 - 47263562
Alignment:
Q  164 cttctgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 243  Q
    |||||||||||| |||||||||| | |||||||||||||  |||||| |||| |||||||||  || ||||||||||||||    
T  47263485 cttctgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgcgtggagcaaagga-agtggtaatcaatg 47263562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 16879894 - 16879970
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  16879894 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16879970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 16884750 - 16884826
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  16884750 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16884826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 24261587 - 24261511
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  24261587 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24261511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 24266466 - 24266390
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  24266466 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24266390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 11856795 - 11856901
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  11856795 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 11856894  T
Q  287 tagtgta 293  Q
    |||||||    
T  11856895 tagtgta 11856901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 14737838 - 14737732
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  14737838 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 14737739  T
Q  287 tagtgta 293  Q
    |||||||    
T  14737738 tagtgta 14737732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 14742697 - 14742591
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||  ||| |||||||||||    
T  14742697 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcatacaacaacaaaacagccctagac 14742598  T
Q  287 tagtgta 293  Q
    |||||||    
T  14742597 tagtgta 14742591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 22010958 - 22010875
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22010958 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 22010875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 6438324 - 6438429
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagact 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||  ||    
T  6438324 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaaccaatggcttccaagcaaacaacaacaaacagccctaagct 6438423  T
Q  288 agtgta 293  Q
    ||||||    
T  6438424 agtgta 6438429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 28184325 - 28184434
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaac--aaatggtttccaagcaaacaaca--aaaccagcccta 283  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||  ||| ||||||||    
T  28184325 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaaaatggtctccaagcaaacaacaacaaaacagcccta 28184424  T
Q  284 gactagtgta 293  Q
    ||||||||||    
T  28184425 gactagtgta 28184434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 28155832 - 28155749
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||| ||||||||    
T  28155832 tcacaccaatgcaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtcttcaagctaacaacaa 28155749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 5675057 - 5674934
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  ||||||||||||||| ||| | ||| | || |||||||  |    
T  5675057 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagatagtggtaatcaaagagta-aaaagtttcccaagcaaca 5674962  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||||||||||||| ||||||||    
T  5674961 acaacaaaaccagccctagtctagtgta 5674934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 30126084 - 30125960
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa-- 265  Q
    |||||||| ||||||||||| ||||||||||||   |||||| ||||||||||||||| | ||||| ||||| |||||  |||||||| ||||||| |      
T  30126084 tgttgtgaatccggttgaaaatcacaccaatga---aaacaaagatgtgtggagcaagaggtagtgataatctatgag-ccaaatggtctccaagctaac 30125989  T
Q  266 -acaacaaaaccagccctagactagtgta 293  Q
     ||||||||| ||||||||||||||||||    
T  30125988 tacaacaaaaacagccctagactagtgta 30125960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 6005239 - 6005324
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  6005239 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 6005324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 5343322 - 5343387
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  5343322 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 5343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 33330690 - 33330625
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  33330690 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33330625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 33336207 - 33336122
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||| | ||||||||    
T  33336207 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaaactaacaacaa 33336122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 16838566 - 16838651
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||| | ||||| |||||  |||||||  | ||||| ||||||||    
T  16838566 tcacaccaatgagaataaaccaatgatatgtggagcaagtgatagagataatctatgagtgcaaatggccttcaagctaacaacaa 16838651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 31936398 - 31936470
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 243  Q
    |||||||| ||||||| ||| ||||||||||||||  ||||| ||||||||||||||  |  ||||||||||||||    
T  31936398 tgttgtgaatccggttaaaa-tcacaccaatgaaa--aacaaagatgtgtggagcaaaaggaagtggtaatcaatg 31936470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 22173456 - 22173350
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  22173456 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 22173357  T
Q  287 tagtgta 293  Q
    |||||||    
T  22173356 tagtgta 22173350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 166 - 293
Target Start/End: Original strand, 7167049 - 7167174
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca- 264  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||     
T  7167049 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgagca-aaatggtttccaagcaa 7167145  T
Q  265 -aacaacaaaaccagccctagactagtgta 293  Q
     |||||||||| ||||||||||||||||||    
T  7167146 caacaacaaaa-cagccctagactagtgta 7167174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 18656256 - 18656338
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  18656256 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaa 18656338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 2671876 - 2671752
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--- 264  Q
    |||||||| ||||||| ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| |||||  |||||||| ||||||||       
T  2671876 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagcaaac 2671781  T
Q  265 aacaacaaaaccagccctagactagtgta 293  Q
    |||||||||| ||||||||| ||||||||    
T  2671780 aacaacaaaaacagccctagtctagtgta 2671752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 40373085 - 40372986
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 267  Q
    |||||||| ||||||| ||||||||||||||||||   |||| | ||||||||||||| ||||||||||||||||| | | |||||||||||||||||||    
T  40373085 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 40372990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 8477170 - 8477295
Alignment:
Q  167 ctgttgtgattccggt-tgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 265  Q
    ||||||||| |||||| | ||||||||||||||||||   |||| ||||||||||||||  ||||||||||||||| ||| | ||| | || ||||||||    
T  8477170 ctgttgtgaatccggtataaaactcacaccaatgaaa---acaaagatgtgtggagcaaaagatagtggtaatcaaagagtaaaaa-gtttcccaagcaa 8477265  T
Q  266 --acaacaaaaccagccctagactagtgta 293  Q
      ||||||||||||||||||||||||||||    
T  8477266 caacaacaaaaccagccctagactagtgta 8477295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 8739354 - 8739254
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 267  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  8739354 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 8739259  T
Q  268 aacaa 272  Q
    |||||    
T  8739258 aacaa 8739254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 9091592 - 9091492
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 267  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  9091592 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 9091497  T
Q  268 aacaa 272  Q
    |||||    
T  9091496 aacaa 9091492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 8512037 - 8512122
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  8512037 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8512122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 8516917 - 8517002
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  8516917 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8517002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 28504145 - 28504022
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  | ||||| ||||| ||||||| ||||||||||||||||  |    
T  28504145 tgttgtgaatccggtcttaactcacaccaatgaat--aacaatgatgtgtggagcaaaaggtagtgataatctatgagaa-aaatggtttccaagcaaca 28504049  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||| ||||||||||    
T  28504048 acaacaaaa-cagcccttgactagtgta 28504022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 2677351 - 2677266
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||| |||||||  ||||||| ||||||||    
T  2677351 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcctccaagctaacaacaa 2677266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 2673195 - 2673110
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||||  ||||||  ||||||| ||||||||    
T  2673195 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagtaaatggcctccaagctaacaacaa 2673110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 10207755 - 10207840
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  10207755 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 10207840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 44312885 - 44312802
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44312885 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 44312802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 11099219 - 11099093
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca- 264  Q
    |||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||     
T  11099219 tctgttgtgaatccggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaa 11099123  T
Q  265 -aacaacaaaaccagccctagactagtgta 293  Q
     |||||||||| ||||||||||||||||||    
T  11099122 caacaacaaaaacagccctagactagtgta 11099093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 32246607 - 32246714
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 285  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||  ||| ||| ||||||    
T  32246607 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtctccaagctaacaacaacaaaacagtcctaga 32246706  T
Q  286 ctagtgta 293  Q
    ||||||||    
T  32246707 ctagtgta 32246714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 39812250 - 39812166
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  39812250 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 39812166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 14291295 - 14291419
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--- 264  Q
    |||||||| ||||||| ||||||||||||||||||   |||| | ||||||||||||| ||||||||||||||||| | | ||||||||||||||||       
T  14291295 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 14291390  T
Q  265 aacaacaaaaccagccctagactagtgta 293  Q
    |||||||||| ||||||||||||| ||||    
T  14291391 aacaacaaaaacagccctagactaatgta 14291419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 9296691 - 9296567
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--- 264  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  | ||||||||||| ||||| | ||||||||||||||||       
T  9296691 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaaggtagtggtaatctatgagca-aaatggtttccaagcaaac 9296596  T
Q  265 aacaacaaaaccagccctagactagtgta 293  Q
    |||||||||| ||||||||| ||||||||    
T  9296595 aacaacaaaaacagccctagtctagtgta 9296567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 19344243 - 19344327
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| |||||||  ||||||| ||||||||    
T  19344243 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19344327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 19349101 - 19349185
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| |||||||  ||||||| ||||||||    
T  19349101 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19349185  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 25403443 - 25403565
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  25403443 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25403537  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  25403538 acaacaaaaacagccctagactagtgta 25403565  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 25398305 - 25398427
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| || ||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  25398305 tgttgtgaatctggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25398399  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  25398400 acaacaaaaacagccctagactagtgta 25398427  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 25445352 - 25445246
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  25445352 tcacaccaatgaaataaaccaatgatgtgtggagcaagcgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 25445253  T
Q  287 tagtgta 293  Q
    |||||||    
T  25445252 tagtgta 25445246  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 39445322 - 39445428
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| || ||||||||  |    
T  39445322 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatggcttccaagcaaacaacaacaaacagccctaagc 39445421  T
Q  287 tagtgta 293  Q
    |||||||    
T  39445422 tagtgta 39445428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 44024135 - 44024029
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  44024135 tcacaccaatgaaataaaccaatgatgtgtggagcaactgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 44024036  T
Q  287 tagtgta 293  Q
    |||||||    
T  44024035 tagtgta 44024029  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 41386571 - 41386650
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  41386571 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 41386650  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 41398060 - 41398144
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  41398060 tcacaccaatgaaataaaccaattatgtgtggagcaagtgatagtgataatcaatgagaacatatggtctccaagcaaacaacaa 41398144  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 1055274 - 1055168
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||  ||||||| || ||||||||  |    
T  1055274 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatgtcttccaagcttacaacaacaaacagccctaagc 1055175  T
Q  287 tagtgta 293  Q
    |||||||    
T  1055174 tagtgta 1055168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 43988709 - 43988644
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  43988709 caatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 43988644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 24787624 - 24787564
Alignment:
Q  204 aaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 265  Q
    |||||| ||||||||||||||| |||||||||||| |||||| | |||||||||||||||||    
T  24787624 aaacaaagatgtgtggagcaagagatagtggtaataaatgagca-aaatggtttccaagcaa 24787564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 24203054 - 24202932
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 267  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  |  |||||||||| ||| |   |||  || |||||||||||    
T  24203054 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagggagtggtaatctatgtg--taaagtgtctccaagcaaac 24202960  T
Q  268 aaca--aaaccagccctagactagtgta 293  Q
    ||||  ||| |||||||| |||||||||    
T  24202959 aacaacaaaacagccctaaactagtgta 24202932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 19359132 - 19359079
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 224  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  19359132 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 19359079  T

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Target: scaffold0127 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 34211 - 34132
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  34211 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 34132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 185 - 291
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  185 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatggtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 284  T
Q  287 tagtgta 293  Q
    |||||||    
T  285 tagtgta 291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 9902 - 9818
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||||||    
T  9902 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtctccaaccaaacaacaa 9818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 143 - 65
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||| |||||||| |||||||||||||||||||||      |||||||||||| |||||||| |||||| |||||||||    
T  143 tcacaccaattaaataaaccaatgatgtgtggagcaagtga------taatcaatgagagcaaatggtctccaagtaaacaacaa 65  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 291
Target Start/End: Complemental strand, 528 - 404
Alignment:
Q  167 ctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca-- 264  Q
    ||||||||| |||  || ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||      
T  528 ctgttgtgaatccatttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgagcaaaaatggtttccaagcaac 432  T
Q  265 aacaac-aaaaccagccctagactagtg 291  Q
    |||||| |||| |||||||| |||||||    
T  431 aacaacaaaaaacagccctaaactagtg 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 13171 - 13233
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaa 250  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||    
T  13171 tcacaccaatgaaataaaccaaagatatgtggagcaagtgatagtgataatcaatgagaacaa 13233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 19428 - 19343
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  19428 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 19343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 14573 - 14497
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  14573 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 14497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 149219 - 149134
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  149219 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 149134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 2514 - 2429
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||  | ||||| |||||  |||||||  ||||||| ||||||||    
T  2514 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgataaagataatccatgagtgcaaatggcctccaagctaacaacaa 2429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 24331 - 24208
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 265  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  24331 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 24237  T
Q  266 acaac-aaaaccagccctagactagtgta 293  Q
    ||||| |||||||||||||||||||||||    
T  24236 acaacaaaaaccagccctagactagtgta 24208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 44247 - 44174
Alignment:
Q  168 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 243  Q
    |||||||| |||||||||| | |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||    
T  44247 tgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgtgtggagcaaagga-agtggtaatcaatg 44174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 182228 - 182152
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  182228 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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