View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12981_high_13 (Length: 321)
Name: NF12981_high_13
Description: NF12981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12981_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 42239376 - 42239106
Alignment:
| Q |
13 |
catcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatca |
112 |
Q |
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| T |
42239376 |
catcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatcg |
42239277 |
T |
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| Q |
113 |
tcatcaaaattgaatcctttttcgcccagaaattattgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgaca |
212 |
Q |
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| T |
42239276 |
tgatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgaca |
42239177 |
T |
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| Q |
213 |
ctaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239176 |
ctaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtg |
42239106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 17649959 - 17649719
Alignment:
| Q |
27 |
atatttacacctaacaaaagaaatgttaataacacaaatattaagaaa---ttggacctttt-gataatggaatttgatgaaattgatcatcatcaaaat |
122 |
Q |
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| T |
17649959 |
atatttacacctaacaaaataaatgttaataacacaaatattaaaaaaaaattggacctttttgataatggaacttgacgaaattgatcatgatccag-t |
17649861 |
T |
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| Q |
123 |
tgaatcctttttcgcccagaaattattgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagaga |
222 |
Q |
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| T |
17649860 |
tcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagtttttctctcttccaaatacgtttaatgacactaacagaga |
17649764 |
T |
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| Q |
223 |
ccgaatacattgacacaatcaattttctagtcccttttttcagtc |
267 |
Q |
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| T |
17649763 |
ctgaatacattgacgcaatcaattttctagtcccttttttcagtc |
17649719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 283
Target Start/End: Complemental strand, 1328710 - 1328504
Alignment:
| Q |
74 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattattgtttttgtatgagacacatctcc |
172 |
Q |
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| T |
1328710 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
1328612 |
T |
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| Q |
173 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
272 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
1328611 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
1328515 |
T |
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| Q |
273 |
tcatagttgtg |
283 |
Q |
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||| |||||| |
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| T |
1328514 |
acatggttgtg |
1328504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 74 - 272
Target Start/End: Original strand, 42540845 - 42541040
Alignment:
| Q |
74 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattattgtttttgtatgagacacatctcc |
172 |
Q |
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|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || || ||||||| |||||||||||||||| |
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| T |
42540845 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
42540943 |
T |
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| Q |
173 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
272 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
42540944 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
42541040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 4745952 - 4745900
Alignment:
| Q |
220 |
agaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
272 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
4745952 |
agactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
4745900 |
T |
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