View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12981_high_15 (Length: 303)
Name: NF12981_high_15
Description: NF12981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12981_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 44 - 293
Target Start/End: Original strand, 38828102 - 38828351
Alignment:
| Q |
44 |
actataagtattgattaagacaatatatcacaccaattattaagcttaattaaaataacatggctcgtgaacaaggttgttaaatgacacatctgtttta |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38828102 |
actataagtattgattaagacaatatatcacaccaattattaagcttaattaaaataacatggctcgtgaacaaggttgttaaatgacacatctgtttta |
38828201 |
T |
|
| Q |
144 |
ttgtttataattcaattcatacatacactgtcttcatcactgtctcactcgaaagaacagtcattagaaagaacccacaaaacatctactcacaacccaa |
243 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38828202 |
ttctttataattcaattcatacatacactgtcttcatcactgtctcactcgaaagaacagtcattagaaagaacccacaaaacatctactcacaactcaa |
38828301 |
T |
|
| Q |
244 |
tttattttaatcaatcctccacccatagcccgtgacacacacaagaataa |
293 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38828302 |
tttattttaatcaatcccccacccatagcccgtgacacacacaagaataa |
38828351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38822770 - 38822822
Alignment:
| Q |
1 |
aacaggtacgagccgatgccgtgggaacatgttttttgtgtatactataagta |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38822770 |
aacaggtacgagccgatgccgtgggaacatgttttttgtgtatactataagta |
38822822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University