View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12981_high_4 (Length: 387)
Name: NF12981_high_4
Description: NF12981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12981_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 29 - 351
Target Start/End: Complemental strand, 4075246 - 4074923
Alignment:
| Q |
29 |
atatgttcttcgctgtttttgaatcatttcatttattggttaattgtgacactgtaagacagtcaaatttggttgttactcaccacagttgaa-gtgaaa |
127 |
Q |
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| T |
4075246 |
atatgtgcttcgctgtttttgaatcatttcatttattggttaattgtgacactgtaagacagtcaaatttggttgttacttaccacagttgaaagtgaaa |
4075147 |
T |
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| Q |
128 |
aggtatatggaaataaaatgagatgacaactcttgatgaatcgagaaattttaagttgtggggacaatactcgtatagtttgtaaagtacgagtttatct |
227 |
Q |
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| T |
4075146 |
aagtatatggaaataaaatgagatgacaaatcgtgatgaatcgagaaattttaagttgtggggacaatacacgtatagtttgtaaagcacgagtttatct |
4075047 |
T |
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| Q |
228 |
gacttttaatcgggcaaattgctctaatatctactgagttgggtccactatgttgtgaccagatttgaaattacagataaatcatggccaacctagagtt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4075046 |
gacttttaatcgggcaaattgctctaatatctactgaattgggtccactatgttgtgaccagatttgaaattacagataaatcatggccaacctagagtt |
4074947 |
T |
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| Q |
328 |
tggcaaaccaaaggttgtttacaa |
351 |
Q |
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|||||||||||||||||||||||| |
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| T |
4074946 |
tggcaaaccaaaggttgtttacaa |
4074923 |
T |
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