View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12981_high_6 (Length: 376)
Name: NF12981_high_6
Description: NF12981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12981_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 3214966 - 3215311
Alignment:
| Q |
1 |
agagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacag |
100 |
Q |
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| T |
3214966 |
agagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacag |
3215065 |
T |
|
| Q |
101 |
agataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataag |
200 |
Q |
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| T |
3215066 |
agataactggactataaccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataag |
3215165 |
T |
|
| Q |
201 |
attgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgctt |
300 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
3215166 |
attgcgagtatgaatgagatactcttgcaccgtacgattatcaaacgaggtagcacgcaattcaacacgaa-gttgtcttgcctttgcaagcatttgctt |
3215264 |
T |
|
| Q |
301 |
ttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
347 |
Q |
| |
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| T |
3215265 |
ttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
3215311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 347
Target Start/End: Original strand, 32460486 - 32460826
Alignment:
| Q |
7 |
ttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataa |
106 |
Q |
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| T |
32460486 |
ttcttcttgaacttgtcaagacgagtctcatgagcaattaacagagactctacctcatcaatatcaatagtgtcaaatttgctttcaacaactgaaatca |
32460585 |
T |
|
| Q |
107 |
ctggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattg-aagcaagattgtctataagattgc |
205 |
Q |
| |
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|||||||||| | |||||||||||||| ||||| |||||||| |||||| | | |||| ||||||| |||| | |||||||||| || || | ||||| |
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| T |
32460586 |
ctggactatactcttgtggtaaaccttctaaaattacatctaaatgctgagtaatgggaactggatcaccaatggaaagcaagattatcaattaaattgc |
32460685 |
T |
|
| Q |
206 |
gagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgcttttgaa |
305 |
Q |
| |
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|| | |||| |||| ||| ||||||||||||||||||| || |||| |||| ||||||||| | || |||||||||||| |||||||||| |||| |
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| T |
32460686 |
gaatgcgaagaagatgctcctgtaccgtacgattatcaagagaagtagaacgcagttcaacacgta-actgccttgcctttgcacgcatctgcttgtgaa |
32460784 |
T |
|
| Q |
306 |
aataggtcacaagtttgttctagagtttatacgcatgcgaag |
347 |
Q |
| |
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| T |
32460785 |
aataggtcacaagtttgttccgaagttcatacgcatgcgaag |
32460826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 36399448 - 36399779
Alignment:
| Q |
10 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
109 |
Q |
| |
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|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || | ||||||||||||||| || || || || ||||| ||||| | |
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| T |
36399448 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacagatataacag |
36399547 |
T |
|
| Q |
110 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataagattgcgagt |
209 |
Q |
| |
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||||| | | || ||||||||||| ||||| ||||| || || ||||| ||||||| |||||| | || || || ||||| || | ||||| ||| | |
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| T |
36399548 |
gactaaaatcttgcggtaaaccttctaaaatcacatccaaatgttgattaacaggaactggatctcctatagaggctagattatcaacaagatcacgaat |
36399647 |
T |
|
| Q |
210 |
acgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgcttttgaaaata |
309 |
Q |
| |
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||||| ||||| || ||||||||| |||| ||| || |||| |||| |||||||| || |||| | ||||| ||| ||||||| || |||||||| |
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| T |
36399648 |
acgaagaagataatcctgtaccgtaagatttgcaagagaagtagaacgcagttcaacactaa-gttgacgcgccttcgcacgcatctgtttgtgaaaata |
36399746 |
T |
|
| Q |
310 |
ggtcacaagtttgttctagagtttatacgcatg |
342 |
Q |
| |
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| ||||||||| | | | |||| ||||||||| |
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| T |
36399747 |
tgccacaagtttatcccaaagttcatacgcatg |
36399779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 52665850 - 52665923
Alignment:
| Q |
10 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaa |
83 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || ||||||||||||||||| |
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|
| T |
52665850 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaatgtcaataacatcaaa |
52665923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 24789296 - 24789452
Alignment:
| Q |
10 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
109 |
Q |
| |
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|||||||| || |||||||| |||||||||| || || ||||| ||||| || || | ||||||||||||||| || || || || ||| | |||| | |
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| T |
24789296 |
ttcttgaatttatcaagacgtgtttcatgagtaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacaaatataatag |
24789395 |
T |
|
| Q |
110 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaa |
166 |
Q |
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||||| | | |||||||||||||| ||||| ||||| || || ||||| ||||||| |
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| T |
24789396 |
gactaaaatcttgtggtaaaccttctaaaatcacatccaaatgttgattaacaggaa |
24789452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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