View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12981_low_1 (Length: 476)
Name: NF12981_low_1
Description: NF12981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12981_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 24093483 - 24093018
Alignment:
| Q |
1 |
ttgtcaatcttgccatcatgctttgtatctgcttcctcaaacgtctgcaagtaatccaaaatttaatggtaaactattccaagtgagttttcaataaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
24093483 |
ttgtcaatcttgccatcatgctttgtatctgcttcctcaaacgtctgcaagtaatccaaaatttaatgttaaactattccaggtgagttttcaataaaga |
24093384 |
T |
|
| Q |
101 |
gactgaaactcttgtatgcaattagaagtgcaagtgacagaagaacagggtagtaccttgtcgattatactttctataacatcatctgatagattcatac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24093383 |
gactgaaactcttgtatgcaattagaagtgcaagtgacaaaagaacagtgtagcaccttgtcgattatactttctataacatcgtctgatagattcatac |
24093284 |
T |
|
| Q |
201 |
cagactccgcaagtgtagcaacaaccatctgtttcacctgtataaaaagacagacaaaaatcaggctcatctcaaacgagagccaaaaagcatagaatta |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
24093283 |
cagactccgcaagtgtagcaaccaccatctgtttcacctgtataaaaagacagacaaaaatcaggctcgtctcgaacgagagccaaaaataatagaattg |
24093184 |
T |
|
| Q |
301 |
gattttttagaagatgaattacctcttgcctttcaataaaaccttgctgcttgagatcatatagttgaaaggaaactgaaatatgaaattgcaatggttt |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24093183 |
gatttttaagaagatgaattacctcttgcctttcaataaaaccttgctgcttgagatcatatagttgaaaggaaactgaaatatgaaattgcaatggttt |
24093084 |
T |
|
| Q |
401 |
agttctcatttatttaaagagacggatgatgtgtataataaattaaagaagagtttaatgatgatg |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24093083 |
agttctcatttatttaaagagacggatgatgtgtataataaattaaagaagagtttaatggtgatg |
24093018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 42162286 - 42162195
Alignment:
| Q |
148 |
gggtagtaccttgtcgattatactttctataacatcatctgatagattcataccagactccgcaagtgtagcaacaaccatctgtttcacct |
239 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| || ||||| |||||||| ||||| |||||||||| |
|
|
| T |
42162286 |
gggtagtaccttgtcaattatactctctataacatcgtctgatagattcatgccagattcagcaagcgtagcaactaccatttgtttcacct |
42162195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 42162115 - 42162055
Alignment:
| Q |
321 |
acctcttgcctttcaataaaaccttgctgcttgagatcatatagttgaaaggaaactgaaa |
381 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42162115 |
acctcttgtctttcaataaaaccctgctgcttgagatcatacagttgaaaggaaactgaaa |
42162055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42162478 - 42162432
Alignment:
| Q |
1 |
ttgtcaatcttgccatcatgctttgtatctgcttcctcaaacgtctg |
47 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
42162478 |
ttgtcaatcttgccgtcatgctttgtatccgcttcctcaaaagtctg |
42162432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 56200786 - 56200725
Alignment:
| Q |
317 |
aattacctcttgcctttcaataaaaccttgctgcttgagatcatatagttgaaaggaaactg |
378 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||||||||| | ||| || ||||||| |
|
|
| T |
56200786 |
aattacctcctgtctttcaataaaaccttgctgtttgagatcatacaattggaaagaaactg |
56200725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 56203096 - 56203050
Alignment:
| Q |
1 |
ttgtcaatcttgccatcatgctttgtatctgcttcctcaaacgtctg |
47 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
56203096 |
ttgtcaatcttcccatcatgttttgtatcagcttcctcaaatgtctg |
56203050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University