View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12981_low_2 (Length: 403)
Name: NF12981_low_2
Description: NF12981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12981_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 30761433 - 30761703
Alignment:
| Q |
11 |
agaatattcggagctaaaattgacaagatatttatatattatgtgctaaacttgggtgcgaaatcccggacgcacagctaaaagtgctaagattgtttgt |
110 |
Q |
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| T |
30761433 |
agaatattcggagctaaaattgacaagatatttatatattatgtgctaaacttgggtgcgaaatcccggacgcacagctaaaagtgctaagattgtttgt |
30761532 |
T |
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| Q |
111 |
taatgatgaaaactcttggcctaatctaagatcttagtatgttagcagttagacctttcgggattttagtttaagaaactcgctaagacactatgtctca |
210 |
Q |
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| T |
30761533 |
taatgatgaaaactcttggactaatctaagatcttagtatgttagcagttagacctttcggggttttagtttaaggaactcgctaagacactatgtctca |
30761632 |
T |
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| Q |
211 |
ccccatttagtttatgttctcggataaaccagaagcaaggcaaggatacaatgcttagctgttgaagatta |
281 |
Q |
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| T |
30761633 |
ccccatttagtttatgttctcggataaacgcgaagcaaggcaaggatacaatgcttagctgttgaagatta |
30761703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 278 - 390
Target Start/End: Original strand, 30761821 - 30761933
Alignment:
| Q |
278 |
attaaggttttcaatcaattctcttagggttacgaaatcttaatagaaaaacaacagttaagacttattaaggttgtctctaatctctttcttcctcctc |
377 |
Q |
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| T |
30761821 |
attaaggttttcaatcaattctcttagggttacgaaatcttaatagaaaaacaacagttaagacttattaaggttgtctctaatctctttcttcctcctc |
30761920 |
T |
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| Q |
378 |
ctatgttgttttt |
390 |
Q |
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| T |
30761921 |
ctatgttgttttt |
30761933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 390
Target Start/End: Original strand, 30751348 - 30751459
Alignment:
| Q |
278 |
attaaggttttcaatcaattctcttagggttacgaaatcttaatagaaaaacaacagttaagacttattaaggttgtctctaatctctttcttcctcctc |
377 |
Q |
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|||||||| ||||||||||||||||||| |||| ||||||||||| |||||||| || ||||||||||||||||||||| |||||| |||||||||| |
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| T |
30751348 |
attaaggtattcaatcaattctcttagg-ttacaaaatcttaataaaaaaacaattagtaggacttattaaggttgtctctagtctcttacttcctcctc |
30751446 |
T |
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| Q |
378 |
ctatgttgttttt |
390 |
Q |
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| T |
30751447 |
ctatgttgttttt |
30751459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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