View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12982_low_1 (Length: 816)
Name: NF12982_low_1
Description: NF12982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12982_low_1 |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 221 - 608
Target Start/End: Complemental strand, 1236355 - 1235978
Alignment:
| Q |
221 |
tgttattgtcgatcaagtttaacaacaacttagaaataccaagttagaaatactaagttctttgtacattcttacaagagtcctatttataggacagaac |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236355 |
tgttattgtcgatcaagtttaacaacaacttagaaataccaagttagaaatactaagttctttgtacattcttacaagagtcctatttataggacagaac |
1236256 |
T |
|
| Q |
321 |
taataaaatacaggtatattaatggtctaattaagataatgtcattagtgttccactaatttcaatgattaagatgaacatagaagttggaagaccattc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1236255 |
taataaaatacaggtatattaatggtctaattaagataatgtcattagtgttccactaatttcaatgattaagatgcacatagaagttggaagaccattc |
1236156 |
T |
|
| Q |
421 |
tattgatgaagataaaaatgaggacacattcacatccaccaaagtattcataacatgtaatnnnnnnnnntgatataggtaccaaaaatctataaatgaa |
520 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
1236155 |
tattgatgaagataaaaatgaagacacgttcacatccacc-aagtattcataacatgtaataaaaaaaaatgatataggtaccaacaatctataaatg-- |
1236059 |
T |
|
| Q |
521 |
ttgcgtcataaaaaacactttatcaatgaatacactatatggtagctttataac----tatattcactcataattgaactcaataatcttat |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1236058 |
-----------aaaacactttatcaatgaatacactatatggtagctttataactatatatattcactcataattgaactcaataatcttat |
1235978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1236550 - 1236346
Alignment:
| Q |
1 |
caattgaatatctaggttttgatgtagataatgcaggtctgcaaagttctgtttttgtagctgttgcactctttttgcgagctttgtgttgctgttgggt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236550 |
caattgaatatctaggttttgatgtagataatgcaggtctgcaaagttctgtttttgtagctgttgcactctttttgcgagctttgtgttgctgttgggt |
1236451 |
T |
|
| Q |
101 |
gtgtttttagtgtgtaggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatattttgtcgtcgatcatgtgtta |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236450 |
gtgtttttagtgtgtcggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatattttgtcgtcgatcatgtgtta |
1236351 |
T |
|
| Q |
201 |
ttgtc |
205 |
Q |
| |
|
||||| |
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|
| T |
1236350 |
ttgtc |
1236346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 605 - 797
Target Start/End: Complemental strand, 1235946 - 1235739
Alignment:
| Q |
605 |
ttattgttgagagactcgcgcatcaatcaatttcccctcataagatattttctataatccgatgaaaaagttt---------------aattattagaaa |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1235946 |
ttattgttgagagactcgcgcatcaatcaatttcccctcataagatattttctataatccgatgaaaaagtttttcctctcgaagtttaattattagaaa |
1235847 |
T |
|
| Q |
690 |
catgaatttagaccaatataatagtggttaaatatgacaaactcaatgtttttctatgtataaagacgaaataacaatgactacttaaaatctaacacac |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1235846 |
catgaatttagaccaatataatagtggttaaatatgacaaacccaatgtttttctatgtataaagacgaaataacaatgactacttaaaatctaacatac |
1235747 |
T |
|
| Q |
790 |
acataacg |
797 |
Q |
| |
|
|||||||| |
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|
| T |
1235746 |
acataacg |
1235739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 1183239 - 1183373
Alignment:
| Q |
72 |
tttttgcgagctttgtgttgctgttgggtgtgtttttagtgtgtaggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggt |
171 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||||||||| |||| |
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|
| T |
1183239 |
tttttgcgcgcttcatgttgctgttgaatgtgtttttagtgtcgaggg-agttttccttctggtggtcctatgcagtttgctggctgcagcatagttggg |
1183337 |
T |
|
| Q |
172 |
gttgatattttgtcgtcgatcatgtgttattgtctt |
207 |
Q |
| |
|
||||||||||| | || |||||||| |||||||| |
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|
| T |
1183338 |
gttgatatttttgcatctgtcatgtgtgattgtctt |
1183373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 411 - 476
Target Start/End: Complemental strand, 1233369 - 1233304
Alignment:
| Q |
411 |
aagaccattctattgatgaagataaaaatgaggacacattcacatccaccaaagtattcataacat |
476 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1233369 |
aagaccattctactgaagaagataaacatgaggacacattcacatccaccaaagtattcataacat |
1233304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 1194126 - 1194190
Alignment:
| Q |
118 |
gggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatatttt |
182 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
1194126 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttt |
1194190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1183188 - 1183244
Alignment:
| Q |
1 |
caattgaatatctaggttttgatgtagataatgcaggtctgcaaagttctgtttttg |
57 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| |||||||| |||||||||||||| |
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|
| T |
1183188 |
caatagaatatctaggttttgatatagataatgtaggtctgctaagttctgtttttg |
1183244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 1194054 - 1194111
Alignment:
| Q |
22 |
atgtagataatgcaggtctgcaaagttctgtttttgtagctgttgcactctttttgcg |
79 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||||||| | |||||||| |
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|
| T |
1194054 |
atgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcg |
1194111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 673
Target Start/End: Complemental strand, 1233185 - 1233137
Alignment:
| Q |
625 |
catcaatcaatttcccctcataagatattttctataatccgatgaaaaa |
673 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| || ||||| |
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|
| T |
1233185 |
catcaatgaatctcccctcataagatattttctataatcctatcaaaaa |
1233137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 596
Target Start/End: Complemental strand, 1233302 - 1233262
Alignment:
| Q |
556 |
tatatggtagctttataactatattcactcataattgaact |
596 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| |
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| T |
1233302 |
tatatgatagctttataactatattcacttataattgaact |
1233262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 20351 - 20565
Alignment:
| Q |
1 |
caattgaatatctaggttttgatgtagataatgcaggtctgcaaagttctgtttt----tgtagctgttgcactctttttgcgagctttgtgttgctgtt |
96 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||||||||| ||||||||||| |||| ||||||| || |||||| | |||| |||||| |||| |
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|
| T |
20351 |
caatagaatatctaggtttcaatgtggataatgcaggtctgccgagttctgttttattttgtacctgttgcgctatttttgtgtgcttcgtgttgttgtt |
20450 |
T |
|
| Q |
97 |
gggtgtgtttttagtgtgtaggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatattttgtcgtcgatcatgt |
196 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||| | | |||| |||| ||||||||||||| || |||||| |
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|
| T |
20451 |
gggtgtgtttttagtgtgctggggatttttccttctggtggtcctatacagtttgctggcagtaacatagttggagttgatattttgtgatctgtcatgt |
20550 |
T |
|
| Q |
197 |
gttattgtctttagg |
211 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
20551 |
gttattgtatttagg |
20565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 20256510 - 20256439
Alignment:
| Q |
140 |
ctatgcagtttgctggttgcagcatatttggtgttgatattttgtcgtcgatcatgtgttattgtctttagg |
211 |
Q |
| |
|
|||||||||||| ||| |||| |||| |||| |||||||||||||| || ||||||||||||||||||||| |
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|
| T |
20256510 |
ctatgcagtttgttggctgcaacatagttggagttgatattttgtcatctgtcatgtgttattgtctttagg |
20256439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 12857370 - 12857476
Alignment:
| Q |
105 |
ttttagtgtgtaggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatattttgtcgtcgatcatgtgttattgt |
204 |
Q |
| |
|
|||||||||| ||||| |||||||||| | ||||||||||| ||||||| |||||||| |||| |||||||||||||| | |||||||||||| | |
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|
| T |
12857370 |
ttttagtgtgctggggatttttccttctagtggtcctatgcaatttgctgacagcagcatagttggagttgatattttgtcatatgtcatgtgttattat |
12857469 |
T |
|
| Q |
205 |
ctttagg |
211 |
Q |
| |
|
|||||| |
|
|
| T |
12857470 |
atttagg |
12857476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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