View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12982_low_2 (Length: 555)
Name: NF12982_low_2
Description: NF12982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12982_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 101 - 540
Target Start/End: Complemental strand, 32825397 - 32824958
Alignment:
| Q |
101 |
tctctttattaactcatcttcttcaatcatccctataaagaaaaatcttcaacaaaataatcaccaactacaatatttgtctcttctgatcttcatcaaa |
200 |
Q |
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| T |
32825397 |
tctctttattaactcatcttcttcaatcatccctataaagaaaaatcttcaacaaaatcatcaccaactacaatatttgtctcttctgatcttcatcaaa |
32825298 |
T |
|
| Q |
201 |
ggtattgcattttacaattattatacnnnnnnntaaaataaatagtactatctatatctataaactagcatcaccaatgctactaagaagctctattact |
300 |
Q |
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| T |
32825297 |
ggtattgcattttacaattattatacaaaaaaaataaataaatagtactatctatatctataaactagcatcaccaatgctactaagaagctctattact |
32825198 |
T |
|
| Q |
301 |
accactaagaagttcttcaaaaacacattgaagaacttcaagtccttattctcttctgactaccaaaagcttccaaaaagtgattctcctcacaatcact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32825197 |
accactaagaagttcttcaaaaacacattgaagaacttcaagtccttattctcttctgactaccaaaagcttccaaaaagtgattctcctcacaatcact |
32825098 |
T |
|
| Q |
401 |
tatcttattctctagctgcaaatcatgtcatggacatgaacattaacaacactaatggtagctatatgaaattgtctaatgcaagcccttctgaggagaa |
500 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32825097 |
tatcttattctctagctgcaaatcatgtcctggacatgaacattaacaacactagtggtagctatatgaaattgtctaatgcaagcccttctgagaagaa |
32824998 |
T |
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| Q |
501 |
aaatcgggcgaataaaagagaggttttcgacaacaaaaac |
540 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
32824997 |
aaattgggcgaataaaagagaggttttcgacaacaaaaac |
32824958 |
T |
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