View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12983_high_1 (Length: 502)
Name: NF12983_high_1
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12983_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Original strand, 52590213 - 52590684
Alignment:
| Q |
20 |
tgccaaacatgtgttgttgctttcctgaatctgtgaaatgatagtctagtaaatcagtactctgtgaagaagaaaccaatgtctgnnnnnnnnnnnnnnn |
119 |
Q |
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| T |
52590213 |
tgccaaacatgtgttgttgctttcctgaatctgtgaaatgatagtctagtaaatcagtactctgtgaagaagaaaccaatgtctgattattattattatt |
52590312 |
T |
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| Q |
120 |
nngtcttttatgaatggcatcgtcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactc |
219 |
Q |
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| T |
52590313 |
atgtcttttatgaatggcatcgtcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactc |
52590412 |
T |
|
| Q |
220 |
tccacagttgtaaagttacccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttac |
319 |
Q |
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| T |
52590413 |
tccacagttgtaaagttacccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttac |
52590512 |
T |
|
| Q |
320 |
catgcaattttccatttccacaatctatcacannnnnnnctacatgttctctagtggaagaggcttgttgtacactatgatcactagcaataatctgtac |
419 |
Q |
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| T |
52590513 |
catgcaattttccatttccacaatctatcacatttttttctacatgttttctagtggaagaggctttttgtacactatgatcactatcaataatttgtac |
52590612 |
T |
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| Q |
420 |
attgtctcgtgactcttcttccaatttataattaccttggagtgtatttccagatgaaaaattgcagttcat |
491 |
Q |
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| T |
52590613 |
attgtcttgtgactcttcttccaatttattattaccttggagtgtatttccagatgaaaaattgcagttcat |
52590684 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 7301210 - 7301255
Alignment:
| Q |
157 |
aatccatcgctttcacagtttctcaactccaatgcaagagagacat |
202 |
Q |
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| T |
7301210 |
aatccatcactttcagagttcctcaactccaatgcaagtgagacat |
7301255 |
T |
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