View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12983_high_12 (Length: 219)
Name: NF12983_high_12
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12983_high_12 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 76836 - 77015
Alignment:
| Q |
1 |
ctgtatttggtcatgaattgnnnnnnncattccatcatatacatacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttt |
100 |
Q |
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| T |
76836 |
ctgtatttggtcatgaattgtttttttcattccatcat----atacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttt |
76931 |
T |
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| Q |
101 |
tgtttcatattaaggtttttagttaagcatcactctgaaccaaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76932 |
tgtttcatattaaggtttttagttaagcatcactctgaaccaaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
77015 |
T |
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Target: chr7 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 40889448 - 40889269
Alignment:
| Q |
1 |
ctgtatttggtcatgaattgnnnnnnncattccatcatatacatacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttt |
100 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889448 |
ctgtatttggtcatgaattgtttttttcattccatcat----atacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttt |
40889353 |
T |
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| Q |
101 |
tgtttcatattaaggtttttagttaagcatcactctgaaccaaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889352 |
tgtttcatattaaggtttttagttaagcatcactctgaaccaaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
40889269 |
T |
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