View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12983_high_2 (Length: 421)
Name: NF12983_high_2
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12983_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 48923085 - 48923396
Alignment:
| Q |
1 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatatcagtaaattaaagttactcctgatgtcagtaaataaaagggaatatatcatactaatgta |
100 |
Q |
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| T |
48923085 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatatcagtaaattaaagttactcctgatgtcagtaaataaaggggaatatatcatactaatgta |
48923184 |
T |
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| Q |
101 |
gagggaggcttcgttctgcaaacatgagaaggaagaacaattttgatgtgactttacataggaactaggtatcgataattagcaatgtccaaaacttctg |
200 |
Q |
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| T |
48923185 |
gagggaggcttcgttctgcaaacatgagaaggaagaacaattttgatgtgactttacataggaactaggtatcgataattagcaatgtccaaagcttctg |
48923284 |
T |
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| Q |
201 |
-----------catacatgtttgtgcttgctttgagatatataagctataagctacaatgattcgaaacgtatgaaagtggaaggaaatattaagcattt |
289 |
Q |
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| T |
48923285 |
ctaggtagaaacatacatgtttgtgcttgctttgagatatataagctataagctacaatgatttgaaacgtatgaaagtggaaggaaatattaagcattt |
48923384 |
T |
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| Q |
290 |
caatgagtgtga |
301 |
Q |
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| T |
48923385 |
caatgagtgtga |
48923396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 48923394 - 48923466
Alignment:
| Q |
333 |
tgattattgagcaacttgaaggagcgttgagggagtgagtgagtggtgggtgtgtatgtttctgactaaaacc |
405 |
Q |
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| T |
48923394 |
tgattattgagcaacttgaaggagcgttgagggagtgagtgagtggtgggtgtgtatgtttctgactaaaacc |
48923466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 48922988 - 48923034
Alignment:
| Q |
1 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatatcagtaaa |
47 |
Q |
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| T |
48922988 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatgtcagtaaa |
48923034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 48878268 - 48878206
Alignment:
| Q |
82 |
aatatatcatactaatgtagagggaggcttcgttctgcaaacatgagaaggaagaacaatttt |
144 |
Q |
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| T |
48878268 |
aatatatcatgctaaggaagagggaggcttcatcctgcaaacatgagaaagaagaccaatttt |
48878206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 48875688 - 48875605
Alignment:
| Q |
246 |
aatgattcgaaacgtatgaaagtggaaggaaatattaagcatttcaatgagtgtgagtggatcagggaagattgtgagataggc |
329 |
Q |
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| T |
48875688 |
aatgtttcgaagcatatgaaagtggaagaagataccaagcatttcaacgagtgtgcgtggatcagggtgcattgtgaaataggc |
48875605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 48873188 - 48873144
Alignment:
| Q |
100 |
agagggaggcttcgttctgcaaacatgagaaggaagaacaatttt |
144 |
Q |
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| T |
48873188 |
agagggaggctttgttatgcaaacatgagaaagaagaagaatttt |
48873144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 9573919 - 9573867
Alignment:
| Q |
260 |
tatgaaagtggaaggaaatattaagcatttcaatgagtgtgagtggatcaggga |
313 |
Q |
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| T |
9573919 |
tatgaaagtggaagaaaatattcagcatttcaatg-gggtgagtggatcaggga |
9573867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 9583006 - 9582959
Alignment:
| Q |
248 |
tgattcgaaacgtatgaaagtggaaggaaatattaagcatttcaatga |
295 |
Q |
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| T |
9583006 |
tgattcgaagcttatgaaagtggaagaaaatattcagcatttcaatga |
9582959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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