View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12983_high_8 (Length: 282)
Name: NF12983_high_8
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12983_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 32538824 - 32538980
Alignment:
| Q |
18 |
aaagtcacctccattctcttctctttgttatcttcatttgctcttacttctataaatattatttcaactttcattgcacctaaaatttatctctcatcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32538824 |
aaagtcacctccattctcttctctttgttatcttcatttgctcttacttctataaatattgtttcaactttcattgcacctaaaatttatccctcatcac |
32538923 |
T |
|
| Q |
118 |
cttaacacaaaacaaaggcatgacttccctcagagaacttctcacacaagaaggctt |
174 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32538924 |
ctttacacaaaacaaaggcatgacttccctcagagaacttctcacacaagaaggctt |
32538980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 32539015 - 32539088
Alignment:
| Q |
209 |
gagataacattaacatcactccctttacctttacaaatctaccatgatnnnnnnntcattgattgcttcgacca |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
32539015 |
gagataacattaacatcactccctttacctttacaaatctaccatgataaaaaaatcatcgattgcttcgacca |
32539088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University