View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12983_low_10 (Length: 272)
Name: NF12983_low_10
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12983_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 43620497 - 43620251
Alignment:
| Q |
11 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43620497 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttg |
43620398 |
T |
|
| Q |
111 |
tgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatc---atggtccatgttttgatgtcccagtctccca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43620397 |
tgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatcaatatggtccatgttttgatgtcccagtctccca |
43620298 |
T |
|
| Q |
208 |
gccagagtgacatcgattatcaactacatttgactgcgattccccac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43620297 |
gccagagtgacatcgattatcaactacatttgactgcgattctccac |
43620251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 43627125 - 43627035
Alignment:
| Q |
11 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacg |
101 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
43627125 |
catcatcgaaaattatgagaggtgacttgcctcctaattcaagtgaaacatgttttaaattactcttagctgcagcttgcattatttcacg |
43627035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 32407441 - 32407515
Alignment:
| Q |
11 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcag |
85 |
Q |
| |
|
|||||||||| |||| ||||||||| || |||||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
32407441 |
catcatcaaaaattaagaggggtgattttcctcctaattcaagtgaaactggtttcaaattacttctagctgcag |
32407515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University