View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12983_low_11 (Length: 249)

Name: NF12983_low_11
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12983_low_11
NF12983_low_11
[»] chr7 (5 HSPs)
chr7 (210-243)||(23276405-23276438)
chr7 (14-59)||(2443920-2443965)
chr7 (14-59)||(25709415-25709460)
chr7 (13-58)||(26300689-26300734)
chr7 (14-58)||(8091328-8091372)
[»] chr5 (2 HSPs)
chr5 (14-58)||(18841721-18841765)
chr5 (14-48)||(35151347-35151381)
[»] chr4 (2 HSPs)
chr4 (14-58)||(27019378-27019422)
chr4 (14-58)||(55813982-55814026)
[»] chr1 (3 HSPs)
chr1 (15-59)||(47315318-47315362)
chr1 (14-59)||(13321993-13322038)
chr1 (14-59)||(39310802-39310847)
[»] chr8 (4 HSPs)
chr8 (14-58)||(6945225-6945269)
chr8 (14-58)||(7977996-7978040)
chr8 (14-58)||(9580125-9580169)
chr8 (25-57)||(34741692-34741724)
[»] chr6 (1 HSPs)
chr6 (14-58)||(4371957-4372001)
[»] chr3 (2 HSPs)
chr3 (14-58)||(2566600-2566644)
chr3 (13-57)||(32090351-32090395)


Alignment Details
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 23276438 - 23276405
Alignment:
Q  210 gtttggtggtaggcgcttataccttttcatctct 243  Q
    ||||||||||||||||||||||||||||||||||    
T  23276438 gtttggtggtaggcgcttataccttttcatctct 23276405  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 2443920 - 2443965
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattgg 59  Q
    |||||||||| ||||||| ||||||||||||| || ||||||||||    
T  2443920 caaatttacacatgttaagaagtttaaaatagaaattttgtattgg 2443965  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 25709415 - 25709460
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattgg 59  Q
    ||||||| || ||||||| |||||||||||||||| ||||||||||    
T  25709415 caaatttgcacatgttaagaagtttaaaatagtaactttgtattgg 25709460  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 26300734 - 26300689
Alignment:
Q  13 acaaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    |||||||| || |||||||||||||||||||||||| |||| ||||    
T  26300734 acaaatttgcacatgttaaaaagtttaaaatagtaactttgaattg 26300689  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 8091328 - 8091372
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    |||||||||| ||||||| |||||||||||||||| |||| ||||    
T  8091328 caaatttacacatgttaagaagtttaaaatagtaactttgcattg 8091372  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 18841721 - 18841765
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    ||||||| |||||||||||||||||||||||| || |||||||||    
T  18841721 caaatttgcatatgttaaaaagtttaaaatagaaattttgtattg 18841765  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 35151381 - 35151347
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  35151381 caaatttgcatatgttaaaaagtttaaaatagtaa 35151347  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 27019422 - 27019378
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    ||||||| |||||||||||||||||||||||| || |||||||||    
T  27019422 caaatttgcatatgttaaaaagtttaaaatagaaattttgtattg 27019378  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 55814026 - 55813982
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    ||||||| || |||||||||||||||||||| ||| |||||||||    
T  55814026 caaatttgcacatgttaaaaagtttaaaataataattttgtattg 55813982  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 47315362 - 47315318
Alignment:
Q  15 aaatttacatatgttaaaaagtttaaaatagtaagtttgtattgg 59  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||    
T  47315362 aaatttgcatatattaaaaagttaaaaatagtaagtttgtattgg 47315318  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 13322038 - 13321993
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattgg 59  Q
    ||||||| |||||||||| ||||||||||||| || ||||||||||    
T  13322038 caaatttgcatatgttaagaagtttaaaatagaaattttgtattgg 13321993  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 39310802 - 39310847
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattgg 59  Q
    ||||||| || ||||||||||||||||||||| || ||||||||||    
T  39310802 caaatttgcacatgttaaaaagtttaaaatagaaattttgtattgg 39310847  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 6945269 - 6945225
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    ||||||||||||||||||||||||||| |||  || |||||||||    
T  6945269 caaatttacatatgttaaaaagtttaagatataaattttgtattg 6945225  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 7978040 - 7977996
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    ||||||| || ||||||||||||||||||| |||| |||||||||    
T  7978040 caaatttgcaaatgttaaaaagtttaaaatggtaattttgtattg 7977996  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 9580125 - 9580169
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    |||||||||| ||||||| ||||||||||||| || |||||||||    
T  9580125 caaatttacacatgttaagaagtttaaaatagaaattttgtattg 9580169  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 34741692 - 34741724
Alignment:
Q  25 atgttaaaaagtttaaaatagtaagtttgtatt 57  Q
    |||||||||||||||||||| ||||||||||||    
T  34741692 atgttaaaaagtttaaaataataagtttgtatt 34741724  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 4372001 - 4371957
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    |||||||||| ||||||| ||||||||||||| || |||||||||    
T  4372001 caaatttacacatgttaagaagtttaaaatagaaattttgtattg 4371957  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 2566644 - 2566600
Alignment:
Q  14 caaatttacatatgttaaaaagtttaaaatagtaagtttgtattg 58  Q
    |||||||||| |||||| ||| ||||||||||||| |||||||||    
T  2566644 caaatttacacatgttagaaaatttaaaatagtaattttgtattg 2566600  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 32090395 - 32090351
Alignment:
Q  13 acaaatttacatatgttaaaaagtttaaaatagtaagtttgtatt 57  Q
    |||||||| || |||| ||||||||||||||||||| ||||||||    
T  32090395 acaaatttgcacatgtgaaaaagtttaaaatagtaaatttgtatt 32090351  T

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