View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12983_low_4 (Length: 394)
Name: NF12983_low_4
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12983_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 32539196 - 32539581
Alignment:
| Q |
1 |
cattggtttcaccggattcaagaagagaaggaccacctttgaacgaagttgcaatcagagcattggttagtatcctcagtgactacgttgaaagatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32539196 |
cattggtttcaccggattcaagaagagaaggaccacctttgaacgaagttgcaatcagagcattggttagtatcctcagtgactacgttgaaagatatat |
32539295 |
T |
|
| Q |
101 |
aaaagacaattttttcaggaaaacaatctttgagaagtgtcattcttacttggtcagaagaaaaaacagttcagaatcatatgataatgagagtgagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32539296 |
aaaagacaattttttcaggaaaacaatctttgagaagtgtcattcttacttggtcagaagaaaaaacagttcagaatcatgtgataatgagagtgagatt |
32539395 |
T |
|
| Q |
201 |
cttgtgaagatgaaactgagtattgagaatattgacaagttagtacatgatcaagggacaataaaagagcttaagataaaaagtttgaggaattcaattg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32539396 |
cttgtgaagatgaaattgagtattgagaatattgacaagttagtacatgatcaagggacaataaaagagcttaagataaaaagtttgaggaattcaattg |
32539495 |
T |
|
| Q |
301 |
agcttttaaccataattgcagaattaaattccaatagtttacaagttgcaacaacatgtggaataccaaattctcatctctctgct |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32539496 |
agcttttaaccataattgcagaattaaattccaatagtttacaagttgcaacaacatgcggaataccaaattctcatctctctgct |
32539581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University