View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12983_low_5 (Length: 369)

Name: NF12983_low_5
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12983_low_5
NF12983_low_5
[»] chr1 (8 HSPs)
chr1 (151-354)||(24415554-24415758)
chr1 (131-313)||(24365101-24365286)
chr1 (31-350)||(24309899-24310224)
chr1 (238-354)||(24322180-24322296)
chr1 (11-63)||(24415772-24415824)
chr1 (131-205)||(24367026-24367100)
chr1 (117-205)||(24369356-24369444)
chr1 (274-353)||(24365014-24365091)
[»] chr6 (1 HSPs)
chr6 (117-203)||(21015672-21015758)
[»] chr4 (25 HSPs)
chr4 (117-202)||(48852530-48852615)
chr4 (117-213)||(48870398-48870494)
chr4 (117-213)||(48886084-48886180)
chr4 (118-213)||(7877582-7877677)
chr4 (119-224)||(7822817-7822922)
chr4 (117-213)||(50250913-50251009)
chr4 (117-167)||(48863131-48863181)
chr4 (119-224)||(7237845-7237950)
chr4 (136-213)||(7786302-7786379)
chr4 (119-224)||(7800485-7800590)
chr4 (119-224)||(7813328-7813433)
chr4 (119-212)||(37827119-37827212)
chr4 (118-159)||(48875756-48875797)
chr4 (117-158)||(48898630-48898671)
chr4 (117-165)||(50672401-50672450)
chr4 (118-213)||(7773950-7774045)
chr4 (117-159)||(48170703-48170745)
chr4 (136-213)||(7765480-7765557)
chr4 (117-160)||(49041278-49041321)
chr4 (117-156)||(49044319-49044358)
chr4 (143-213)||(7908190-7908260)
chr4 (117-155)||(48891326-48891364)
chr4 (117-158)||(33133937-33133978)
chr4 (35-91)||(49041196-49041252)
chr4 (117-161)||(49048707-49048751)
[»] chr3 (2 HSPs)
chr3 (117-213)||(47452030-47452126)
chr3 (117-213)||(11015642-11015738)
[»] chr5 (5 HSPs)
chr5 (119-210)||(29687970-29688061)
chr5 (118-156)||(29261163-29261201)
chr5 (117-155)||(29696126-29696164)
chr5 (117-159)||(42562454-42562496)
chr5 (31-91)||(29696199-29696259)
[»] chr7 (1 HSPs)
chr7 (118-156)||(30120435-30120473)
[»] chr8 (1 HSPs)
chr8 (129-213)||(15348718-15348802)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 151 - 354
Target Start/End: Complemental strand, 24415758 - 24415554
Alignment:
Q  151 ccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttcgataggaaaatcaagtttgtgaacaaaattagggttg 250  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||     
T  24415758 ccataggtaaatgtttgtataagagtaaaaaaatatgaaccctctacatgaacctataattttgataggtaaatcaagtttgtgaacaaaattagggtta 24415659  T
Q  251 agtaaagtaggagcagaattaccggt-aaacaatgaatccaaagctatggatcgaagttcagaagtttctgttacaaacagaattcgacgagtgtgtgtt 349  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  24415658 agtaaagtaggagcagaatgatcggtaaaacaatgaatccaaagctatggatcgaagttcagaagtctctgttacgaacagaattcgacgagtgtgtgtt 24415559  T
Q  350 gcagc 354  Q
    |||||    
T  24415558 gcagc 24415554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 313
Target Start/End: Complemental strand, 24365286 - 24365101
Alignment:
Q  131 tgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttcgataggaaaatcaagtt 230  Q
    ||||||||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  | |  |||||||||||    
T  24365286 tgaactccattggatggattccatagctaaaagtttggataagagtacaaaaatatgaaccctctacatgaacctataattttaagatcaaaatcaagtt 24365187  T
Q  231 tgtgaa---caaaattagggttgagtaaagtaggagcagaattaccggtaaacaatgaatccaaagctatggatcgaagttcagaa 313  Q
    ||| ||    |||||| ||||| ||  ||| |  |||||||| | | |||||||||||||||||| ||||||||||||||| ||||    
T  24365186 tgtcaagtggaaaattggggttaagagaagcaaaagcagaatgatctgtaaacaatgaatccaaaactatggatcgaagtttagaa 24365101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 24310224 - 24309899
Alignment:
Q  31 ataggatattgaaactatcaagtaatcgtctttcgactcatcatacccaaaaccatagaaagttgaacgtgaaaaaccattgtag-----taaggtattt 125  Q
    |||||||| | |||||| ||||||||| ||| | ||||| ||||| ||||||||||||||| || |||||||| ||   | | ||      |||||||||    
T  24310224 ataggatactaaaactaccaagtaatcatctcttgactcgtcataaccaaaaccatagaaatttaaacgtgaataa--ttgggaggaggcgaaggtattt 24310127  T
Q  126 gtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttcgataggaaaatc 225  Q
    || | ||||||||||||||||||||||||| ||||||||||| | || | | ||| ||||| || ||||||||||||||||||| ||  | |  |||||     
T  24310126 gtctatgaactccggtggatggattccatacgtaaatgtttgaaaaacactccaacaatataaaacctctacatgaacctataactttaagatcaaaatg 24310027  T
Q  226 aagtttgtgaa---caaaattagggttgagtaaagtaggagcagaattaccggtaaacaatgaatccaaagctatggatcgaagttcagaagtttctgtt 322  Q
    |  |||  |||   ||||||||||||| | || || ||||||||||| |   |||||||||||||| |||||||| ||||||| ||||| | || |||||    
T  24310026 agatttaggaagatcaaaattagggttcaatagagcaggagcagaatcagaagtaaacaatgaatctaaagctatagatcgaaattcaggaattcctgtt 24309927  T
Q  323 acaaacagaattcgacgagtgtgtgttg 350  Q
    |  || ||||||| ||| ||||||||||    
T  24309926 atgaagagaattctacgggtgtgtgttg 24309899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 354
Target Start/End: Complemental strand, 24322296 - 24322180
Alignment:
Q  238 aaaattagggttgagtaaagtaggagcagaattaccggtaaacaatgaatccaaagctatggatcgaagttcagaagtttctgttacaaacagaattcga 337  Q
    |||||||||||  |||| |  ||||||||||| |  ||| ||||||||||| |||| ||| ||||||| || || | |||||||||||||||||||||||    
T  24322296 aaaattagggtccagtagaacaggagcagaatcagtggtgaacaatgaatctaaaggtatagatcgaaattgaggaatttctgttacaaacagaattcga 24322197  T
Q  338 cgagtgtgtgttgcagc 354  Q
    |||||||||||||||||    
T  24322196 cgagtgtgtgttgcagc 24322180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 24415824 - 24415772
Alignment:
Q  11 acatcatctgagtttggaatataggatattgaaactatcaagtaatcgtcttt 63  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  24415824 acatcatctgagtttggaatataggatactgaaactaccaagtaatcgtcttt 24415772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 24367100 - 24367026
Alignment:
Q  131 tgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacct 205  Q
    ||||||| ||||||||| ||||||||||||||||||| | |||||| ||| ||||| ||||||| ||||||||||    
T  24367100 tgaactctggtggatgggttccataggtaaatgtttgaagaagagtgcaacaatataaaccctcgacatgaacct 24367026  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 24369444 - 24369356
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacct 205  Q
    ||||||||||| | ||||| | ||| || | |||||||| |||||| || |||| ||||||||||| ||| ||||||||||||||||||    
T  24369444 aaggtatttgtctatgaaccctggtagacgtattccataagtaaattttcggattagagtacaaaagtataaaccctctacatgaacct 24369356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 24365091 - 24365014
Alignment:
Q  274 ggtaaacaatgaatccaaagctatggatcgaagttcagaagtttctgttacaaacagaattcgacgagtgtgtgttgcag 353  Q
    ||||||||||||||| |||| ||||||||||| |||| |||||||  ||   |||||||||||| ||||||| |||||||    
T  24365091 ggtaaacaatgaatctaaagttatggatcgaacttcataagtttc--ttgagaacagaattcgatgagtgtgggttgcag 24365014  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 21015758 - 21015672
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaac 203  Q
    |||||||||||||||||||||  |||||||||||||||||||| ||||||| || |  || ||||||||| ||||||||||||||||    
T  21015758 aaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 48852615 - 48852530
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaa 202  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | || | ||  || ||||||||| || ||||||||||||    
T  48852615 aaggtatttgtttgtgaactccggtggatggattccatagataaatctctgaagaacggtgcaaaaatataaagcctctacatgaa 48852530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 48870494 - 48870398
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    |||||||||||||||||| |||||||||||||||||||||||| | | |||||  | | | ||| ||||| || ||||||||||||||| |||||||    
T  48870494 aaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttc 48870398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 48886180 - 48886084
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    |||||||||||||||||| |||||||||||||||||||||||| | | |||||  | | | ||| ||||| || ||||||||||||||| |||||||    
T  48886180 aaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttc 48886084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 7877677 - 7877582
Alignment:
Q  118 aggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    |||||||||||| | || ||| |||||||||||||||| ||| ||| |||||| | ||||||||| ||| |||||||| ||||||||| |||||||    
T  7877677 aggtatttgttttttaaatccagtggatggattccatatgtagatgattggatgacagtacaaaagtataaaccctctgcatgaacctctaatttc 7877582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 7822922 - 7822817
Alignment:
Q  119 ggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttcgatag 218  Q
    ||||||||||| | || ||| || |||||||||||||||||||||| |||| ||  ||| |||||||  ||||||| |||||| ||||||||||| | ||    
T  7822922 ggtatttgtttcttaaatccagtagatggattccataggtaaatgtctggaaaacggtataaaaataaaaaccctccacatgaccctataatttcaaaag 7822823  T
Q  219 gaaaat 224  Q
    ||||||    
T  7822822 gaaaat 7822817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 50250913 - 50251009
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    ||||||||||| ||||||  ||||||||||||||||||||||| | | ||| | || |||  |||||||| || ||||||||||||||| |||||||    
T  50250913 aaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaatttc 50251009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 48863181 - 48863131
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaatgtttg 167  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  48863181 aaggtatttgtttctgagctccggtggatggattccataggtagatgtttg 48863131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 7237845 - 7237950
Alignment:
Q  119 ggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttcgatag 218  Q
    ||||||||||| | || ||| |||||||||||||||| ||| |||||||||     |||||||| ||| |||||||||||||||||| | ||||| | ||    
T  7237845 ggtatttgttttttaaatccagtggatggattccatacgtagatgtttggaggttggtacaaaagtataaaccctctacatgaacctctgatttcaacag 7237944  T
Q  219 gaaaat 224  Q
    ||||||    
T  7237945 gaaaat 7237950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 7786379 - 7786302
Alignment:
Q  136 tccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    |||||||||||||||||||| |||||||||||||| |   |||| |||||| || ||||||||||| ||| |||||||    
T  7786379 tccggtggatggattccatatgtaaatgtttggatgacgatacataaatataaaacctctacatgaccctttaatttc 7786302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 7800590 - 7800485
Alignment:
Q  119 ggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttcgatag 218  Q
    ||||||||||| | || ||| || ||||||||||| |||||||||| |||| ||  ||| |||||||  ||||||| |||||| ||||||||||| | ||    
T  7800590 ggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccacatgaccctataatttcaaaag 7800491  T
Q  219 gaaaat 224  Q
    ||||||    
T  7800490 gaaaat 7800485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 7813433 - 7813328
Alignment:
Q  119 ggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttcgatag 218  Q
    ||||||||||| | || ||| || ||||||||||| |||||||||| |||| ||  ||| |||||||  ||||||| |||||| ||||||||||| | ||    
T  7813433 ggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccacatgaccctataatttcaaaag 7813334  T
Q  219 gaaaat 224  Q
    ||||||    
T  7813333 gaaaat 7813328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 37827119 - 37827212
Alignment:
Q  119 ggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataattt 212  Q
    |||||||||||||||| ||| |||||||||||||||| ||| ||||||  | ||  || ||||||||  |||||||||| ||||||| ||||||    
T  37827119 ggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaattt 37827212  T

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Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 48875797 - 48875756
Alignment:
Q  118 aggtatttgtttgtgaactccggtggatggattccataggta 159  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  48875797 aggtatttgtttgtgaaatccggtggatggattccataggta 48875756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 48898671 - 48898630
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggt 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  48898671 aaggtatttgtttgtgagctccggtggatggattccataggt 48898630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 50672450 - 50672401
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccat-aggtaaatgtt 165  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  50672450 aaggtatttgtttgtgaactcctgtggatggattccataaggtaaatgtt 50672401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 7773950 - 7774045
Alignment:
Q  118 aggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    |||||||||||| | || ||| |||||||||||||||| ||| |||||||| | |   ||||||| ||| ||||||||||| |||||| |||||||    
T  7773950 aggtatttgttttttaaatccagtggatggattccatatgtagatgtttgggtcacgatacaaaagtataaaccctctacacgaacctctaatttc 7774045  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 48170703 - 48170745
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggta 159  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  48170703 aaggtatttgtttatgaactcgggtggatggattccataggta 48170745  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 7765557 - 7765480
Alignment:
Q  136 tccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    |||||||||||||||||| | ||| |||||||||| |  ||||| |||||| || ||||||||||| ||| |||||||    
T  7765557 tccggtggatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttaatttc 7765480  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 49041278 - 49041321
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaa 160  Q
    |||||||| |||||||| ||||||||||||| ||||||||||||    
T  49041278 aaggtattagtttgtgagctccggtggatgggttccataggtaa 49041321  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 49044319 - 49044358
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccatag 156  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  49044319 aaggtatttgtttgtgaactctagtggatggattccatag 49044358  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 7908260 - 7908190
Alignment:
Q  143 gatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    ||||||||||||| ||| |||| ||||  |  |||||||| ||| |||||||||||||||||| |||||||    
T  7908260 gatggattccatatgtagatgtctggaggacggtacaaaagtataaaccctctacatgaacctctaatttc 7908190  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 48891364 - 48891326
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccata 155  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  48891364 aaggtatttgtttgtgaagtccagtggatggattccata 48891326  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 33133937 - 33133978
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggt 158  Q
    ||||||||||||| ||||||| |||| |||||||||||||||    
T  33133937 aaggtatttgtttatgaactcgggtgaatggattccataggt 33133978  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 49041196 - 49041252
Alignment:
Q  35 gatattgaaactatcaagtaatcgtctttcgactcatcatacccaaaaccatagaaa 91  Q
    |||| |||||| ||||||||||| ||| | |||  ||||||||||||||||||||||    
T  49041196 gatactgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaa 49041252  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 49048707 - 49048751
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaa 161  Q
    ||||||||||| |||||||||  |||||||||||||| |||||||    
T  49048707 aaggtatttgtctgtgaactctagtggatggattccaaaggtaaa 49048751  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 47452030 - 47452126
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    |||||||||||||||||||||| |||||||||||||||| ||| ||||||| | || |    |||| ||| |||||||||||||||||| |||||||    
T  47452030 aaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaatttc 47452126  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 11015642 - 11015738
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    |||||||||||||||||  ||| || ||||||||||||||||| ||||||| | || |   ||||| ||| || ||||||||||||| | |||||||    
T  11015642 aaggtatttgtttgtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttc 11015738  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 29688061 - 29687970
Alignment:
Q  119 ggtatttgtttgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataat 210  Q
    ||||||||| |||||||||||||||||||||||||||| |||| | ||| ||||  | |  ||| ||| || ||||||||||||||| ||||    
T  29688061 ggtatttgtctgtgaactccggtggatggattccatagataaaggcttgaataaccggagcaaagtataaaacctctacatgaacctctaat 29687970  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 29261201 - 29261163
Alignment:
Q  118 aggtatttgtttgtgaactccggtggatggattccatag 156  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  29261201 aggtatttgtttgtggactccggttgatggattccatag 29261163  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 29696164 - 29696126
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccata 155  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  29696164 aaggtattcgtttgtgaaatccggtggatggattccata 29696126  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 42562454 - 42562496
Alignment:
Q  117 aaggtatttgtttgtgaactccggtggatggattccataggta 159  Q
    |||||||||||||||||  |||| |||||||||||||||||||    
T  42562454 aaggtatttgtttgtgatgtccgatggatggattccataggta 42562496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 29696259 - 29696199
Alignment:
Q  31 ataggatattgaaactatcaagtaatcgtctttcgactcatcatacccaaaaccatagaaa 91  Q
    |||||| |||||||  | ||||||||| ||| | ||||| |||||||||||||||||||||    
T  29696259 ataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccatagaaa 29696199  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 30120435 - 30120473
Alignment:
Q  118 aggtatttgtttgtgaactccggtggatggattccatag 156  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  30120435 aggtatttgtttgtggactccggtggatggattccatag 30120473  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 15348802 - 15348718
Alignment:
Q  129 tgtgaactccggtggatggattccataggtaaatgtttggataagagtacaaaaatatgaaccctctacatgaacctataatttc 213  Q
    |||||| ||||||||||||||||||||| || | | ||| |||| ||| ||||| ||  || ||||||||||||||| |||||||    
T  15348802 tgtgaaatccggtggatggattccatagatagaggattgaataatagttcaaaagtacaaagcctctacatgaacctttaatttc 15348718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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