View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12983_low_6 (Length: 318)
Name: NF12983_low_6
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12983_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 6399789 - 6399497
Alignment:
| Q |
8 |
agattattctggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctga |
107 |
Q |
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| T |
6399789 |
agattagtctggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctga |
6399690 |
T |
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| Q |
108 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtattt |
207 |
Q |
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| T |
6399689 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtattt |
6399590 |
T |
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| Q |
208 |
gatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaa |
300 |
Q |
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| T |
6399589 |
gatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaa |
6399497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 6412713 - 6413005
Alignment:
| Q |
8 |
agattattctggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctga |
107 |
Q |
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| T |
6412713 |
agattagtctggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctga |
6412812 |
T |
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| Q |
108 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtattt |
207 |
Q |
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| T |
6412813 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtattt |
6412912 |
T |
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| Q |
208 |
gatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaa |
300 |
Q |
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| T |
6412913 |
gatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaa |
6413005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 6409970 - 6410259
Alignment:
| Q |
8 |
agattattctggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctga |
107 |
Q |
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| T |
6409970 |
agattagtctggaagagtataaagcagctgcaaaatctttggataaggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctga |
6410066 |
T |
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| Q |
108 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtattt |
207 |
Q |
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| T |
6410067 |
caaagatggcttcatagactttaaagagttcatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtattt |
6410166 |
T |
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| Q |
208 |
gatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaa |
300 |
Q |
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| T |
6410167 |
gatataaatggagatgggaaaatcagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaa |
6410259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 6405396 - 6405258
Alignment:
| Q |
17 |
tggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatgg |
116 |
Q |
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| T |
6405396 |
tggaagagtataaagcagctgcaaaagctttggataagggggtag---gggatactgatgcagtgaaagcatttaaggccatggactatgacaaagatgg |
6405300 |
T |
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| Q |
117 |
cttcatagactttaaagagtttatggaaatgttcaatggaga |
158 |
Q |
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| T |
6405299 |
attcatagactttagagagtttatggaaatgttcaatggaga |
6405258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 6403072 - 6403009
Alignment:
| Q |
225 |
gaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagt |
288 |
Q |
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| T |
6403072 |
gaaaattagtgctgatgaattgtctcaaatatttaagaggttaggagagagttgtagccttagt |
6403009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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