View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12983_low_8 (Length: 289)
Name: NF12983_low_8
Description: NF12983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12983_low_8 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 77297 - 77172
Alignment:
| Q |
14 |
catcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcacataacaaacaacatc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77297 |
catcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcacataacaaacaacatc |
77198 |
T |
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| Q |
114 |
attagtataaaataatggtggtgact |
139 |
Q |
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|||||||||||||||||||||||||| |
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| T |
77197 |
attagtataaaataatggtggtgact |
77172 |
T |
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Target: scaffold0041; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 77108 - 77022
Alignment:
| Q |
203 |
catttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagaagaagataaaaaagcac |
289 |
Q |
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| T |
77108 |
catttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagatgaagataaaaaagcac |
77022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 40888987 - 40889112
Alignment:
| Q |
14 |
catcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcacataacaaacaacatc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888987 |
catcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcacataacaaacaacatc |
40889086 |
T |
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| Q |
114 |
attagtataaaataatggtggtgact |
139 |
Q |
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| T |
40889087 |
attagtataaaataatggtggtgact |
40889112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 40889176 - 40889262
Alignment:
| Q |
203 |
catttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagaagaagataaaaaagcac |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40889176 |
catttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagatgaagataaaaaagcac |
40889262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 28271428 - 28271513
Alignment:
| Q |
14 |
catcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcaca |
99 |
Q |
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|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||||| |
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| T |
28271428 |
catcatgaacagcttgtgaaaccaaacccattagaccaatgcttcctcctccataaactagatcaatatttcttgacaccttcaca |
28271513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 21625377 - 21625303
Alignment:
| Q |
21 |
aacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaacctt |
95 |
Q |
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||||||||||||||| || ||||| | ||||||||| ||||||||||| || | |||||| || ||||| ||||| |
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| T |
21625377 |
aacagcttgagaaaccaaccccatcaaaccaatgctgcctcctccataaaccaaatcaatatttcttgacacctt |
21625303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 40465818 - 40465899
Alignment:
| Q |
14 |
catcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaacctt |
95 |
Q |
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|||||| |||||||||||||| || ||||| | ||||||||| ||||||||||| || || ||||| || ||||| ||||| |
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| T |
40465818 |
catcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacacctt |
40465899 |
T |
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