View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_high_13 (Length: 297)
Name: NF12984_high_13
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_high_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 52811318 - 52811598
Alignment:
| Q |
17 |
aggaatagaaccaagttcactccaactccgaagaaagctaaagtagccagtgcttgattcactgcattgttcattcttcaaaaactcaaataaaagtaac |
116 |
Q |
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| T |
52811318 |
aggaacagaaccaagttcactccaactccaaagaaagctaaagtagccagtgcttgattcactgcattgttcattcttcaaaaactcaaataaaagtaac |
52811417 |
T |
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| Q |
117 |
aaataaaaagagtttgcaatcattttagtagtagtaagtacctaacaagagggttgcgactttggttcctccttttttattctcattcgctctgccactt |
216 |
Q |
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| T |
52811418 |
aaataaaaagagtttgcaatcattttagtagtagtaagtacctaacaagagggttgcaactttggttcctccttttttattctcattcgctctgccactt |
52811517 |
T |
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| Q |
217 |
tcttccataacaacctcttctctgtaattctcatttccttccattttacctacctatttgtttataaagcaaatctatatt |
297 |
Q |
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| T |
52811518 |
tcttccataacaacctcttctctgtaattctcatttccttccattttacctacctatttgtttataaagcaaatctatatt |
52811598 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 396015 - 395948
Alignment:
| Q |
17 |
aggaatagaaccaagttcactccaactccgaagaaagctaaagtagccagtgcttgattcactgcatt |
84 |
Q |
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||||| ||||||||||||||||||||||| ||||| |||| || |||||||||||||| ||||||| |
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| T |
396015 |
aggaacagaaccaagttcactccaactccaaagaatgctagtgttgccagtgcttgattagctgcatt |
395948 |
T |
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