View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_high_15 (Length: 287)
Name: NF12984_high_15
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_high_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 3635034 - 3634758
Alignment:
| Q |
11 |
aatttgttgggtcatagactcctagtaacctatgaagcacaaacacaaatacggacccaacatgacacaaacatgtaaacgttgataataatttgagaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3635034 |
aatttgttgggtcatagactcctagtaacctatgaagcacaaacacaaatacggacccgacatgacacaaacatgtaaacgttgataataatttgagaaa |
3634935 |
T |
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| Q |
111 |
atgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttgaacaccacaccaacatgtggctgacaccataacatacctgatgtttgtgctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3634934 |
atgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttgaacaccacaccaacatgtggctgacaccataacatacctgatgtttgtgctt |
3634835 |
T |
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| Q |
211 |
cataaatagtaacaaataaacaaacataagataattgtttattatatttgttccactgacaaatatctgatttcaca |
287 |
Q |
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| T |
3634834 |
cataaatagtaacaaataaacaaacataagataattgtttattatatttgttccactgacaaatatctgatttcaca |
3634758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 7214573 - 7214530
Alignment:
| Q |
96 |
taataatttgagaaaatgacaaaatttaatctaattatatgcgt |
139 |
Q |
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| T |
7214573 |
taataatttgagaaaatcacataatttaatgtaattatatgcgt |
7214530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 41017455 - 41017416
Alignment:
| Q |
96 |
taataatttgagaaaatgacaaaatttaatctaattatat |
135 |
Q |
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| T |
41017455 |
taataatttgagaaaatgacataatttaatgtaattatat |
41017416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 6427358 - 6427420
Alignment:
| Q |
96 |
taataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttg |
158 |
Q |
| |
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||||||||||||||||| ||| |||| ||| |||||||||| |||||| ||||| ||| |||| |
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| T |
6427358 |
taataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtcagggttg |
6427420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 40747826 - 40747786
Alignment:
| Q |
94 |
gataataatttgagaaaatgacaaaatttaatctaattata |
134 |
Q |
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||||||||||||||||||||||| |||| ||| |||||||| |
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| T |
40747826 |
gataataatttgagaaaatgacataattcaatgtaattata |
40747786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 13211336 - 13211298
Alignment:
| Q |
92 |
ttgataataatttgagaaaatgacaaaatttaatctaat |
130 |
Q |
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| T |
13211336 |
ttgataataatttgagaaaatgacataatttaatataat |
13211298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 9195805 - 9195752
Alignment:
| Q |
96 |
taataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtg |
149 |
Q |
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||||||||||||||||||||| |||||| | |||||||||| || ||| ||||| |
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| T |
9195805 |
taataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtg |
9195752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 34201098 - 34201057
Alignment:
| Q |
95 |
ataataatttgagaaaatgacaaaatttaatctaattatatg |
136 |
Q |
| |
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|||||||||||||||||||||| |||| ||| |||||||||| |
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| T |
34201098 |
ataataatttgagaaaatgacataattcaatgtaattatatg |
34201057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 38749616 - 38749567
Alignment:
| Q |
94 |
gataataatttgagaaaatgacaaaatttaatctaattatatgcgttggt |
143 |
Q |
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||||||||||||| ||||||||| |||| ||| |||||||||| |||||| |
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| T |
38749616 |
gataataatttgaaaaaatgacataattcaatgtaattatatgtgttggt |
38749567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 3751981 - 3751909
Alignment:
| Q |
96 |
taataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttgaacaccacac |
168 |
Q |
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||||||||||||||||| ||| || | | | |||||||||| ||| || ||||| ||||||||||||| |||| |
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| T |
3751981 |
taataatttgagaaaatcacataactaagtataattatatgtgttagtatcgtgtcagtgttgaacacgacac |
3751909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 18919075 - 18919035
Alignment:
| Q |
94 |
gataataatttgagaaaatgacaaaatttaatctaattata |
134 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||||| |
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| T |
18919075 |
gataataatttgagaaaatgacataatttaagttaattata |
18919035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 28576724 - 28576760
Alignment:
| Q |
96 |
taataatttgagaaaatgacaaaatttaatctaatta |
132 |
Q |
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|||||||||||||||||||||||||| ||| |||||| |
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| T |
28576724 |
taataatttgagaaaatgacaaaattgaatgtaatta |
28576760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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