View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_high_2 (Length: 894)
Name: NF12984_high_2
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 107 - 657
Target Start/End: Complemental strand, 37323973 - 37323422
Alignment:
| Q |
107 |
gtgtgtgggtttaaacattatatctgcttctgtaatattttattcaacaatgaaactattcacttatgcttttagtaggcgattaaacatatgttgtgag |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323973 |
gtgtgtgggtttaaacattatatctgcttctgtaatattttattcaacaatgaaactattcacttatgcttttagtaggcgattaaacatatgttgtgag |
37323874 |
T |
|
| Q |
207 |
gtaacagaaggagaacataaaaacatgatttctaaagcgataaagaggacatgaattaaaggaaattgttcatgagatttttactctatgtagagtggag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323873 |
gtaacagaaggagaacataaaaacatgatttctaaagcgataaagaggacgtgaattaaaggaaattgttcatgagatttttactctatgtagagtggag |
37323774 |
T |
|
| Q |
307 |
tactttgatacaagagtacccttgacatacgtacatttacgcaaagtggaatactctgatataagagcagtactcttgacatacggacctttgtgaatgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323773 |
tactttgatacaagagtacccttgacatacgtacatttacgcaaagtggaatactctgatataagagcagtactcttgacatacggacctttgtgaatgt |
37323674 |
T |
|
| Q |
407 |
gcaagtcagggtctattcctatgaaattctaggaaaaattcgtagagcatttgttaaatcaagattgacatgtaaggtcttaatggacaaactttttg-a |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
37323673 |
gcaagtcagggtctattcctatgaaattctaggaaaaattcgtagagcatttgttaaatcaagattgatatgtaaggtcttaatggacaaactttttgaa |
37323574 |
T |
|
| Q |
506 |
aatacacttaagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagtcactctaataaatctgaatcttattcactctacaattg |
605 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37323573 |
aatacacataagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagtcactctaataaatctgaatcttattcactatacaattg |
37323474 |
T |
|
| Q |
606 |
ttcaagttgcaaaacacatctacttatgcacaatcttaaaagaaacttccga |
657 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323473 |
ttcaagttgcaaaacacatctacttatgcacaatcttaaaagaaacttccga |
37323422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 727 - 880
Target Start/End: Complemental strand, 37323353 - 37323200
Alignment:
| Q |
727 |
tcgacaagttccacattggagatacttcccgcaacataagtatttatatattggaggaagggctcttggggcttgccccaaagagatatccaatttttta |
826 |
Q |
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||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323353 |
tcgacaagtcccacattggagatacttctcacaacacaagtatttatatattggaggaagggctcttggggcttgccccaaagagatatccaatttttta |
37323254 |
T |
|
| Q |
827 |
aaggggagatgatgcaatcaatttcaacactacacacgtgaagacgatgatgtc |
880 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
37323253 |
aaggggagatgatgcaatcaatttcaacactacacacgtgaagacaatgatgtc |
37323200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 498 - 596
Target Start/End: Complemental strand, 19950847 - 19950747
Alignment:
| Q |
498 |
ctttttga-aatacacttaagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagtcactctaat-aaatctgaatcttattcac |
595 |
Q |
| |
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|||||||| ||||||| ||||||||| |||||| | |||||| | |||||||||||| |||| |||||||||||||| | ||||||||||||||||||| |
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| T |
19950847 |
ctttttgagaatacacctaagaaaatgttgtgtgtggtttgatgtcagagatagagttcaagactacgagtcactctagtaaaatctgaatcttattcac |
19950748 |
T |
|
| Q |
596 |
t |
596 |
Q |
| |
|
| |
|
|
| T |
19950747 |
t |
19950747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 596
Target Start/End: Original strand, 23191084 - 23191184
Alignment:
| Q |
498 |
ctttttga-aatacacttaagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagtcactctaat-aaatctgaatcttattcac |
595 |
Q |
| |
|
|||||||| |||| || |||||||| |||||| | |||||||| |||||||||||| |||| ||||||||| |||| | ||||||||||||||||||| |
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| T |
23191084 |
ctttttgagaatatacctaagaaaaggttgtgtgtggtttgatatcagagatagagttcaagactacgagtcattctagtaaaatctgaatcttattcac |
23191183 |
T |
|
| Q |
596 |
t |
596 |
Q |
| |
|
| |
|
|
| T |
23191184 |
t |
23191184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 594
Target Start/End: Original strand, 41319078 - 41319178
Alignment:
| Q |
496 |
aactttttga-aatacacttaagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagtcactctaat-aaatctgaatcttattc |
593 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||| || | |||||| | ||| |||||||| |||| |||||||||||||| | |||| |||||||||||| |
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| T |
41319078 |
aactttttgagaatacacctaagaaaaggttgtctatggtttgatgtcagaaatagagttcaagactacgagtcactctagtaaaatatgaatcttattc |
41319177 |
T |
|
| Q |
594 |
a |
594 |
Q |
| |
|
| |
|
|
| T |
41319178 |
a |
41319178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 541 - 573
Target Start/End: Original strand, 23388077 - 23388109
Alignment:
| Q |
541 |
ttagagatagagtttaagattacgagtcactct |
573 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
23388077 |
ttagagatagagtttaagattacgagtcactct |
23388109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 648
Target Start/End: Original strand, 41558216 - 41558331
Alignment:
| Q |
533 |
ttttgatattagagatagagtttaagattacgagtcactctaataaa-tctgaatcttattcactctacaattgttcaagttgcaaaacacatctactta |
631 |
Q |
| |
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||||||| | |||||||||||| |||| || ||||||||||| |||| | ||||||||||||||| | ||| |||||| | | || |||| |||||||| |
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| T |
41558216 |
ttttgatttgagagatagagtt-aagactatgagtcactctagtaaaatttgaatcttattcactattcaaaggttcaattcgtaagacacctctactta |
41558314 |
T |
|
| Q |
632 |
tgcacaatcttaaaaga |
648 |
Q |
| |
|
|| ||||||||| |||| |
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|
| T |
41558315 |
tggacaatcttagaaga |
41558331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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