View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_high_7 (Length: 591)
Name: NF12984_high_7
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 42837186 - 42836944
Alignment:
| Q |
1 |
atgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaagcggcgcggctaccacgagcaacttctcttgggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
42837186 |
atgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaagcggc-----taccacgagcaactcctcttgggtt |
42837092 |
T |
|
| Q |
101 |
ttccggtgagttggtagtttctaatacactatgtcgatctagggttttggttttattgtttaaaacaaggattactctggtcttatatagtagagaatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837091 |
ttccggtgagttggtagtttctaatacactatgtcgatctagggttttggttttattgtttaaaacaaggattactctggtcttatatagtagagaatac |
42836992 |
T |
|
| Q |
201 |
ttggtattgggcttttgtttatctcgtttaaaaatataataatttata |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42836991 |
ttggtattgggcttttgtttatctcgtttaaaaatataataatttata |
42836944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 384 - 589
Target Start/End: Original strand, 29494874 - 29495077
Alignment:
| Q |
384 |
ctgtagcagaggattggtctcatctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatc |
483 |
Q |
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||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| |
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| T |
29494874 |
ctgtagcagaggattcgtcccatctccctctcccatgccatttcccttttctcccaactctagcacctc--gcgagatttcaccgtcgccgccgtcgatc |
29494971 |
T |
|
| Q |
484 |
ttcgattctcccctttcacccgtcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtag |
583 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
29494972 |
ttcgactctcccctttcacccgtcgctgattgaaatccattgtgtctccattattatctatttgtgctctctctcgtcgccggttttctttcaaccgtag |
29495071 |
T |
|
| Q |
584 |
cacgct |
589 |
Q |
| |
|
|||||| |
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|
| T |
29495072 |
cacgct |
29495077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 29494737 - 29494801
Alignment:
| Q |
248 |
agagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29494737 |
agagcactgatacccataccaccataggtggcataccactcataca-ccctcttgtgtggcacatt |
29494801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 384 - 586
Target Start/End: Original strand, 6607944 - 6608144
Alignment:
| Q |
384 |
ctgtagcagaggattggtctcatctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatc |
483 |
Q |
| |
|
|||||| |||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||| |||||||| ||||||| |
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| T |
6607944 |
ctgtagtagaggattgggcccatctctctctctcatgccatttcccttttctcccaaccctagcacctcacg--agatttcgccgtcgccgtcgtcgata |
6608041 |
T |
|
| Q |
484 |
ttcgattctcccctttcacccgtcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtag |
583 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| | |||||||| ||| |||| |
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| T |
6608042 |
ttcgattctcccctttcacccatcgctgattgaaattcattgtgtctccattattatctatttgtgctctctcttgtcggcggttttcttttaactgtag |
6608141 |
T |
|
| Q |
584 |
cac |
586 |
Q |
| |
|
||| |
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|
| T |
6608142 |
cac |
6608144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 384 - 586
Target Start/End: Complemental strand, 6626156 - 6625962
Alignment:
| Q |
384 |
ctgtagcagaggattggtctcatctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatc |
483 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||| ||||| |
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| T |
6626156 |
ctgtagtagaggattgggcccatctctctctcccatgccatttcccttttctcccaaccctagcacctcacg--agatttcgccgtcg------tcgata |
6626065 |
T |
|
| Q |
484 |
ttcgattctcccctttcacccgtcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtag |
583 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||| |
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| T |
6626064 |
ttcgattctcccctttcacccatcgctgattgaaattcattgtgtctccattattatctatttgtgctctctcttgtcggcggttttctttcaactgtag |
6625965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 6626717 - 6626652
Alignment:
| Q |
248 |
agagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt |
313 |
Q |
| |
|
||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
6626717 |
agagcactgatacacatatctccatagctggcataccactcatacacccctcttgtgtagcacatt |
6626652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 6607504 - 6607564
Alignment:
| Q |
248 |
agagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt |
313 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
6607504 |
agagcactgatacacatacctccatagctggcata-----catacacccctcttgtgtagcacatt |
6607564 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 406 - 586
Target Start/End: Original strand, 19843237 - 19843415
Alignment:
| Q |
406 |
tctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatcttcgattctcccctttcacccg |
505 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| || ||| |||||||||||||||||||||||||| |
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|
| T |
19843237 |
tctctctctcccatgccatttcccttttctcccaaccctagcacctcacg--agatttcaccgtcaccgtcgttgatcttcgattctcccctttcacccg |
19843334 |
T |
|
| Q |
506 |
tcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtagcac |
586 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||| |
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|
| T |
19843335 |
ccgctgattgaaattcattgtgtctccattattatctatttgtgctctctcttgtcggcggttttctttcaactgtagcac |
19843415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 19843075 - 19843144
Alignment:
| Q |
244 |
ttatagagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt |
313 |
Q |
| |
|
||||||||||||| || |||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19843075 |
ttatagagcactgttatacatacctccatagctggcataccactcatacacccctcttgtgtggcacatt |
19843144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 406 - 586
Target Start/End: Complemental strand, 9793838 - 9793666
Alignment:
| Q |
406 |
tctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatcttcgattctcccctttcacccg |
505 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||||||||||| || ||||||||| ||| |||||| ||||| ||||||||||||| | |
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|
| T |
9793838 |
tctctctcccccatgccctttccctttcctcccaaccctagcacctt--gcaagatttcactgtct------tcgatcatcgatcctcccctttcacctg |
9793747 |
T |
|
| Q |
506 |
tcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtagcac |
586 |
Q |
| |
|
|||| ||||||||||||| | |||||||||||| | ||||||||||||| || | | |||||||||||||||||||| |
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|
| T |
9793746 |
tcgctgattgaaatccatcgcgtctccattattcttcctttgtgctctctctcgccagcggttttctttcaaccgtagcac |
9793666 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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