View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12984_high_9 (Length: 378)

Name: NF12984_high_9
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12984_high_9
NF12984_high_9
[»] chr1 (2 HSPs)
chr1 (18-370)||(9469238-9469590)
chr1 (152-203)||(3855309-3855360)
[»] chr5 (8 HSPs)
chr5 (243-317)||(23737554-23737628)
chr5 (241-314)||(22129045-22129118)
chr5 (102-155)||(19708796-19708849)
chr5 (152-203)||(19708727-19708778)
chr5 (152-203)||(24696999-24697050)
chr5 (241-314)||(5023621-5023694)
chr5 (102-155)||(24697068-24697121)
chr5 (289-317)||(19906402-19906430)
[»] chr2 (4 HSPs)
chr2 (242-316)||(28574778-28574852)
chr2 (242-313)||(6661146-6661217)
chr2 (243-313)||(30934587-30934657)
chr2 (242-304)||(40070694-40070756)
[»] chr8 (5 HSPs)
chr8 (233-314)||(28952132-28952213)
chr8 (152-203)||(22170135-22170186)
chr8 (152-203)||(28553543-28553594)
chr8 (102-155)||(22170064-22170117)
chr8 (102-155)||(28553472-28553525)
[»] chr3 (8 HSPs)
chr3 (242-311)||(21530221-21530290)
chr3 (152-203)||(15352493-15352544)
chr3 (98-155)||(10574134-10574191)
chr3 (102-155)||(13247184-13247237)
chr3 (102-155)||(15352562-15352615)
chr3 (102-155)||(15602461-15602514)
chr3 (102-155)||(18521191-18521244)
chr3 (152-196)||(18521262-18521306)
[»] chr4 (10 HSPs)
chr4 (241-311)||(34742409-34742479)
chr4 (98-155)||(19920998-19921055)
chr4 (242-313)||(3794024-3794095)
chr4 (152-203)||(18267715-18267766)
chr4 (152-203)||(19920929-19920980)
chr4 (152-201)||(10622845-10622894)
chr4 (102-155)||(10622912-10622965)
chr4 (102-155)||(26969045-26969098)
chr4 (242-314)||(7622189-7622261)
chr4 (241-305)||(7777564-7777628)
[»] chr7 (5 HSPs)
chr7 (241-314)||(22691036-22691109)
chr7 (152-203)||(15151022-15151073)
chr7 (102-155)||(11537640-11537693)
chr7 (102-155)||(15150951-15151004)
chr7 (240-268)||(43311577-43311605)
[»] scaffold0179 (2 HSPs)
scaffold0179 (241-317)||(23817-23893)
scaffold0179 (242-317)||(11223-11298)
[»] chr6 (10 HSPs)
chr6 (102-184)||(32557995-32558074)
chr6 (98-155)||(27277288-27277345)
chr6 (98-155)||(27295780-27295837)
chr6 (98-155)||(27302179-27302236)
chr6 (152-203)||(17685978-17686029)
chr6 (245-314)||(19830985-19831054)
chr6 (102-155)||(29314426-29314479)
chr6 (155-203)||(27277366-27277414)
chr6 (155-203)||(27295858-27295906)
chr6 (155-203)||(27302257-27302305)
[»] scaffold0433 (2 HSPs)
scaffold0433 (98-155)||(5679-5736)
scaffold0433 (152-203)||(5754-5805)
[»] scaffold0390 (2 HSPs)
scaffold0390 (98-155)||(8513-8570)
scaffold0390 (152-203)||(8444-8495)
[»] scaffold0019 (1 HSPs)
scaffold0019 (110-155)||(10635-10680)
[»] scaffold0705 (2 HSPs)
scaffold0705 (152-203)||(1297-1348)
scaffold0705 (102-155)||(1366-1419)
[»] scaffold0234 (3 HSPs)
scaffold0234 (152-203)||(3829-3880)
scaffold0234 (102-155)||(3898-3951)
scaffold0234 (102-155)||(12787-12840)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 9469238 - 9469590
Alignment:
Q  18 attaaccaattttggtctaacattcttctccatgaatggaacacaaactaattcaacaatgattgctgttggatttccaattctagtagcacaagatcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  9469238 attaaccaattttggtctaacattcttctccatgaatggaacacaaactaattcaacaatgattgttgttggatttccaattccagtagcacaagatcta 9469337  T
Q  118 gataagtatgatatgtcatagcactaagctgagaaacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggtaaaaaatggcctaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9469338 gataagtatgatatgtcatagcactaagctgagaaacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggtaaaaaatggcctaa 9469437  T
Q  218 aatctaaaaagtgattagattcgacactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagcaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9469438 aatctaaaaagtgattagattcgacactacaagaaatgttgcattttaccacggaattatgctaggagcatgaactcctggcaaatttgccaggagcaat 9469537  T
Q  318 cccacataacccctggcaaaatgaaaggccccccttactttatagcctttgct 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9469538 cccacataacccctggcaaaatgaaaggccccccttactttatagcctttgct 9469590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 3855360 - 3855309
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  3855360 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 3855309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 23737554 - 23737628
Alignment:
Q  243 actacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagcaat 317  Q
    |||||||||||| |||||| |||||| ||||  |||| ||||| | |||||||||||||||||||||||||||||    
T  23737554 actacaagaaatcttgcatattgccagggaacaatgccaggagcaagaactcctggcaaatttgccaggagcaat 23737628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 22129118 - 22129045
Alignment:
Q  241 acactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagc 314  Q
    |||||||||||||| ||| || |||||| ||||| |||| ||||| | ||||||||||||||||||||||||||    
T  22129118 acactacaagaaatcttgtatattgccagggaataatgccaggagcaagaactcctggcaaatttgccaggagc 22129045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 19708849 - 19708796
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| |||||||||||||||| ||||| | |||||||||    
T  19708849 agtagcacatgatctagatgagtatgatatgtcataacactaggatgagaaaca 19708796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 19708778 - 19708727
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  19708778 aacaaggtgatatgatgctcatggaagatgagcacatgacttactagaaggt 19708727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 24697050 - 24696999
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  24697050 aacaaggtgatatgatgctcatggaagatgagcacatgacttactagaaggt 24696999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 5023694 - 5023621
Alignment:
Q  241 acactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagc 314  Q
    |||||||||||||| ||| || ||| || ||||| |||| | ||| | |||||||||| |||||||||||||||    
T  5023694 acactacaagaaatcttgtatattgtcagggaataatgccaagagcaagaactcctggaaaatttgccaggagc 5023621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 24697121 - 24697068
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  24697121 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 24697068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 19906402 - 19906430
Alignment:
Q  289 gaactcctggcaaatttgccaggagcaat 317  Q
    |||||||||||||||||||||||||||||    
T  19906402 gaactcctggcaaatttgccaggagcaat 19906430  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 28574778 - 28574852
Alignment:
Q  242 cactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagcaa 316  Q
    |||||||||||||||||||| ||| || | ||| |||||||||| | ||||||||||||||||||||||| ||||    
T  28574778 cactacaagaaatgttgcatattgtcatgaaataatgctaggagcaagaactcctggcaaatttgccaggggcaa 28574852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 6661217 - 6661146
Alignment:
Q  242 cactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggag 313  Q
    |||||||||||||  |||| || |||| |||||||||| ||||| |||||| ||||| ||||||||||||||    
T  6661217 cactacaagaaatcctgcaattagccagggaattatgccaggagcatgaacccctgggaaatttgccaggag 6661146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 30934587 - 30934657
Alignment:
Q  243 actacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggag 313  Q
    |||| |||||||||||||| |||||| ||||| |||| ||||| | |||||||| |||||||| |||||||    
T  30934587 actataagaaatgttgcatattgccagggaataatgccaggagcaagaactcctagcaaatttaccaggag 30934657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 40070756 - 40070694
Alignment:
Q  242 cactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatt 304  Q
    |||||||||||||||||||| | |||| ||||| |||| ||||| | |||||||||| |||||    
T  40070756 cactacaagaaatgttgcatatggccagggaataatgccaggagcaagaactcctggaaaatt 40070694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 28952132 - 28952213
Alignment:
Q  233 tagattcgacactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagc 314  Q
    |||||| | ||||||||||||| ||| || |||||| ||||| |||| ||||| | ||||||||||||||||||||||||||    
T  28952132 tagattagtcactacaagaaatcttgtatattgccagggaataatgccaggagcaagaactcctggcaaatttgccaggagc 28952213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 22170135 - 22170186
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  22170135 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 22170186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 28553543 - 28553594
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  28553543 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 28553594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 22170064 - 22170117
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  22170064 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 22170117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 28553472 - 28553525
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  28553472 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 28553525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 21530221 - 21530290
Alignment:
Q  242 cactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccagg 311  Q
    |||||||||||||  |||||||||||| | |||||||| ||||| || ||||||||||||||||||||||    
T  21530221 cactacaagaaatcctgcattttgccaggaaattatgccaggagcatcaactcctggcaaatttgccagg 21530290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 15352544 - 15352493
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  15352544 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 15352493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 10574191 - 10574134
Alignment:
Q  98 ttctagtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||||||| ||| ||||| ||| |||||||||||| ||||| | |||||||||    
T  10574191 ttctagtagcacatgatatagatgagtctgatatgtcataacactaggatgagaaaca 10574134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 13247184 - 13247237
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  13247184 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 13247237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 15352615 - 15352562
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  15352615 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 15352562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 15602514 - 15602461
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  15602514 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 15602461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 18521191 - 18521244
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  18521191 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 18521244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 18521262 - 18521306
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttact 196  Q
    ||||||||||||||||||||| | ||||||||||  |||||||||    
T  18521262 aacaaggtgatatgatgctcatggaagatgagcacctgacttact 18521306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 34742409 - 34742479
Alignment:
Q  241 acactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccagg 311  Q
    ||||||||||||||  |||||||||||| | |||||||| ||||| || ||| ||||||||||||||||||    
T  34742409 acactacaagaaatcctgcattttgccaggaaattatgccaggagcatcaacccctggcaaatttgccagg 34742479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 19921055 - 19920998
Alignment:
Q  98 ttctagtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  19921055 ttctagtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 19920998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 3794024 - 3794095
Alignment:
Q  242 cactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggag 313  Q
    |||||||||||||  |||| || || | |||||||||| ||||| |||||| ||||| ||||||||||||||    
T  3794024 cactacaagaaatcctgcaattagctagggaattatgccaggagcatgaacccctggaaaatttgccaggag 3794095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 18267715 - 18267766
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  18267715 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 18267766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 19920980 - 19920929
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  19920980 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 19920929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 10622894 - 10622845
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaag 201  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||    
T  10622894 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaag 10622845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 10622965 - 10622912
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  10622965 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 10622912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 26969045 - 26969098
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  26969045 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 26969098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 7622189 - 7622261
Alignment:
Q  242 cactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagc 314  Q
    ||||||||||||| |||  | |||||| ||||  |||| ||||| |  |||||||||||||||||||||||||    
T  7622189 cactacaagaaatcttgtgtattgccagggaaaaatgccaggagcaaaaactcctggcaaatttgccaggagc 7622261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 7777628 - 7777564
Alignment:
Q  241 acactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaattt 305  Q
    ||||||||||||||  |||| || |||| |||| ||||| ||||| | |||||||||||||||||    
T  7777628 acactacaagaaatcatgcaattagccaaggaactatgccaggagcaagaactcctggcaaattt 7777564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 22691109 - 22691036
Alignment:
Q  241 acactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagc 314  Q
    ||||||||||||||||||||| |||||| ||||| |||| ||||| | ||||| ||| ||||||| ||||||||    
T  22691109 acactacaagaaatgttgcatattgccagggaataatgccaggagcaagaactgctgtcaaattttccaggagc 22691036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 15151022 - 15151073
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  15151022 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 15151073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 11537693 - 11537640
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  11537693 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 11537640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 15150951 - 15151004
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  15150951 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 15151004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 43311577 - 43311605
Alignment:
Q  240 gacactacaagaaatgttgcattttgcca 268  Q
    |||||||||||||||||||||||||||||    
T  43311577 gacactacaagaaatgttgcattttgcca 43311605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 23893 - 23817
Alignment:
Q  241 acactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagcaat 317  Q
    ||||||||||||| | |||| || | || |||| ||||| ||||| | |||||||||||||||||||||||||||||    
T  23893 acactacaagaaaagatgcaattagtcagggaactatgccaggagcaagaactcctggcaaatttgccaggagcaat 23817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 11223 - 11298
Alignment:
Q  242 cactacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagcaat 317  Q
    |||||||||||| | |||| || |||| |||| ||||| ||||| | |||||| ||||||||||||||||||||||    
T  11223 cactacaagaaaagatgcaattagccagggaactatgccaggagcaagaactcttggcaaatttgccaggagcaat 11298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 32558074 - 32557995
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaacaaggtgatatgatgctcaagaaagatgagc 184  Q
    |||| |||||||||||| ||||| |||||||||||| ||||||   || | ||||| |||||||||||||| |||||||||||    
T  32558074 agtaacacaagatctaggtaagtctgatatgtcatatcactaa---gaaacacaagatgatatgatgctcatgaaagatgagc 32557995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 27277288 - 27277345
Alignment:
Q  98 ttctagtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  27277288 ttctagtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 27277345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 27295780 - 27295837
Alignment:
Q  98 ttctagtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  27295780 ttctagtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 27295837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 27302179 - 27302236
Alignment:
Q  98 ttctagtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  27302179 ttctagtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 27302236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 17686029 - 17685978
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  17686029 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 17685978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 19831054 - 19830985
Alignment:
Q  245 tacaagaaatgttgcattttgccacggaattatgctaggagtatgaactcctggcaaatttgccaggagc 314  Q
    |||||||||| || ||| |||||| ||||  |||| ||||| | |||||||||| |||||||||||||||    
T  19831054 tacaagaaatctttcatattgccagggaacaatgccaggagcaagaactcctggaaaatttgccaggagc 19830985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 29314426 - 29314479
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  29314426 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 29314479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 27277366 - 27277414
Alignment:
Q  155 aaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    |||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  27277366 aaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 27277414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 27295858 - 27295906
Alignment:
Q  155 aaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    |||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  27295858 aaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 27295906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 27302257 - 27302305
Alignment:
Q  155 aaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    |||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  27302257 aaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 27302305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 5679 - 5736
Alignment:
Q  98 ttctagtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  5679 ttctagtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 5736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 5754 - 5805
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  5754 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 5805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 8570 - 8513
Alignment:
Q  98 ttctagtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  8570 ttctagtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 8513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 8495 - 8444
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  8495 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 8444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 10635 - 10680
Alignment:
Q  110 aagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||||    
T  10635 aagatctagataagtctgatatgtcatatcactaagatgagaaaca 10680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0705 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 1348 - 1297
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  1348 aacaaggtgatatgatgctcatggaagatgagcacctgacttactagaaggt 1297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0705; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 1419 - 1366
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  1419 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 1366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 3880 - 3829
Alignment:
Q  152 aacaaggtgatatgatgctcaagaaagatgagcatgtgacttacttgaaggt 203  Q
    ||||||||||||||||||||| | ||||||||||  ||||||||| ||||||    
T  3880 aacaaggtgatatgatgctcatggaagatgagcacatgacttactagaaggt 3829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 3951 - 3898
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  3951 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 3898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 12840 - 12787
Alignment:
Q  102 agtagcacaagatctagataagtatgatatgtcatagcactaagctgagaaaca 155  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | |||||||||    
T  12840 agtagcacatgatctagatgagtctgatatgtcataacactaggatgagaaaca 12787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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