View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_low_10 (Length: 349)
Name: NF12984_low_10
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 3634645 - 3634336
Alignment:
| Q |
18 |
atgaacctggaaccccatctagataaaaagtggccaatgtataaataagtgatgagaaaagaagatgaagaatgaaattttggttcttgagatagcacac |
117 |
Q |
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| T |
3634645 |
atgaacctggaaccccatctagataaaaagtggccaatgtataaataagtgatgagaaaagaagatgaagaatgaaattttggttcttgagatagcacac |
3634546 |
T |
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| Q |
118 |
tctttctcaaaacttctttttcatccattttatcatatgaacaagagtgtcctaacccttactagtattgactatttagtatcacaatacaatggtgtta |
217 |
Q |
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| T |
3634545 |
tctttctcaaaacttctttttcatacattttatcatatgaacaagagtgtcctaacccttactagtattgactatttagtatcacaatacaatggtgtta |
3634446 |
T |
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| Q |
218 |
taccatcataag--ttcataataatcaagcacaagaatcatgcaatttgtgtcattaaaatgaccgatgacgtgtcaatatattaatgacttcaatataa |
315 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3634445 |
tatcatcataagttttcataataatcaagcacaagaatcatgcaatttgtgtcattaaaatgaccgatgacgtgtcaatatattgatgacttcaatataa |
3634346 |
T |
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| Q |
316 |
cactactctc |
325 |
Q |
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|||||||||| |
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| T |
3634345 |
cactactctc |
3634336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 3644515 - 3644465
Alignment:
| Q |
20 |
gaacctggaaccccatctagataaaaagtggccaatgtataaataagtgat |
70 |
Q |
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|||||||||||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
3644515 |
gaacctggaaccccatctagctaaaaagtgaccaaagtataaataagtgat |
3644465 |
T |
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