View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_low_11 (Length: 304)
Name: NF12984_low_11
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 34986703 - 34986433
Alignment:
| Q |
16 |
atagaaatatataatgcaaattctggttgtgtctaaacctgtaaaagtgtagcatagtacaaacaaagcattgatacgaaaatgataccgtcaactcatt |
115 |
Q |
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| T |
34986703 |
atagaaatatataatgcaaattctggttgtgtctaaacctgtaaaagtgtagcatagtacaaa----gcattgatacgaaaatgataccgtcaactcact |
34986608 |
T |
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| Q |
116 |
agtacaataaaacaaaatcatagattaaaaccttcagcagagacttaaatctcatgctgattttacaaggacaaaaactatgtgtaactcatagttaaag |
215 |
Q |
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| T |
34986607 |
agtacaataaaacaaaatcatagattaaaaccttcagcagagacttaaatctcatgctgattttacaaggacaaaaactatgtgtaactcatagttaaag |
34986508 |
T |
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| Q |
216 |
agctaggatcatagattaaaacctgcagcagagaaatactacaaagtggaagctaaagagctaggatcatagatt |
290 |
Q |
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| T |
34986507 |
agctaggatcatagattaaaacccgcagcagagaaatactacaaagtggaagctaaagagctaggatcatagatt |
34986433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 34986434 - 34986382
Alignment:
| Q |
160 |
ttaaatctcatgctgattttacaaggacaaaaactatgtgtaactcatagtta |
212 |
Q |
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| T |
34986434 |
ttaaaactcatgctgattttacaaggacaaaaactatgtgtaactcatagtta |
34986382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 34993250 - 34993200
Alignment:
| Q |
160 |
ttaaatctcatgctgattttacaaggacaaaaactatgtgtaactcatagt |
210 |
Q |
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| T |
34993250 |
ttaaaactcatgctgattttacaaggacaaaaactatgtgcaactcatagt |
34993200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 34978229 - 34978170
Alignment:
| Q |
50 |
aaacctgtaaaagtgtagcatagtacaaacaaagcattgatacgaaaatgataccgtcaactca |
113 |
Q |
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|||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
34978229 |
aaacctgtaaaagtgtggtatagtacaaa----gcattgatacgaaaatgatgccgtcaactca |
34978170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 34993289 - 34993249
Alignment:
| Q |
250 |
aatactacaaagtggaagctaaagagctaggatcatagatt |
290 |
Q |
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| T |
34993289 |
aatactacaaagtggatgctaaagagctaggaccatagatt |
34993249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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