View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_low_14 (Length: 287)
Name: NF12984_low_14
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_low_14 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 269
Target Start/End: Complemental strand, 8342387 - 8342121
Alignment:
| Q |
3 |
gttaagcacccagtggaatatcgtcgatgatgttaactgattccaaccaagaccaaggacagtaagagaagtggaaaagttcaaattggattcatagaaa |
102 |
Q |
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| T |
8342387 |
gttaagcacccagtggaatatcgtcgatgatgttaactgattccaaccaagatgaaggacagtaagagaagtggaaaagttcaaattggattcatagaaa |
8342288 |
T |
|
| Q |
103 |
ggatacatggtggcatcagaaaggctacattcagtaagatacaactcttcaaggcttttaagcttccctaggaattgcagggtgtgatgagaagaatcat |
202 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8342287 |
ggatacatgttggcatcagaaaggctacattcagtaagatacaactcttcaaggcttttaagcttccctaggaattgcagggtgtgatgagaagaatcat |
8342188 |
T |
|
| Q |
203 |
tgagattttgaacaaaactcaagtgaagtcttttcaaagaagagagtcttgatagccactcagagtt |
269 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8342187 |
tgagattttgaacaaaactcaagctaagtcttttcaaagaagagagacttgatagccactcagagtt |
8342121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 26728055 - 26727863
Alignment:
| Q |
3 |
gttaagcacccagtggaatatcgtcgatgatgttaactgattccaaccaagaccaaggacagtaagagaagtggaaaagttcaaattggattcatagaaa |
102 |
Q |
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| T |
26728055 |
gttaagcaccaagtggaatatcattgatgacgtcaattcattccaagatagatcaaggagagtaagagaaatagaagagttcaaatgggaatcagataaa |
26727956 |
T |
|
| Q |
103 |
ggatacatggtggcatcagaaaggctacattcagtaagatacaactcttcaaggcttttaagcttccctaggaattgcagggtgtgatgagaa |
195 |
Q |
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| T |
26727955 |
ggaaaaatattgtcatcaaaaatgccacattcacttagatacaattgttcaaggcttggaagcttcaataaaaattgtagggtgtgataagaa |
26727863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 114 - 264
Target Start/End: Complemental strand, 44612392 - 44612242
Alignment:
| Q |
114 |
ggcatcagaaaggctacattcagtaagatacaactcttcaaggcttttaagcttccctaggaattgcagggtgtgatgagaagaatcattgagattttga |
213 |
Q |
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|||||||||||||||||| | | |||| |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
44612392 |
ggcatcagaaaggctacaattgcttagatgcaactcttcaaggcttggaagcttcattaggaattgcaaggtgtgatgagaagaatcgttgagattttga |
44612293 |
T |
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| Q |
214 |
acaaaactcaagtgaagtcttttcaaagaagagagtcttgatagccactca |
264 |
Q |
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||| |||||||| ||| || ||| ||||||||| |||||||||||||| |
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| T |
44612292 |
acatcactcaagtcaagaattctcacagaagagagatttgatagccactca |
44612242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 16817886 - 16817770
Alignment:
| Q |
148 |
tcttcaaggcttttaagcttccctaggaattgcagggtgtgatgagaagaatcattgagattttgaacaaaactcaagtgaagtcttttcaaagaagaga |
247 |
Q |
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|||||||||||| ||||||| ||||||||||||| | ||||||||| |||| |||||| |||||||| ||||||||| || || | ||||| |||| |
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| T |
16817886 |
tcttcaaggcttggaagcttcactaggaattgcagtgcatgatgagaaaaatcgttgagactttgaacataactcaagtcaatatttcttaaagaggaga |
16817787 |
T |
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| Q |
248 |
gtcttgatagccactca |
264 |
Q |
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| T |
16817786 |
gatttgatagccactca |
16817770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 44145170 - 44145095
Alignment:
| Q |
139 |
agatacaactcttcaaggcttttaagcttccctaggaattgcagggtgtgatgagaagaatcattgagattttgaa |
214 |
Q |
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|||| |||| ||||||||||| ||||||| || |||||| | ||||| |||||||||||| ||||||||||||| |
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| T |
44145170 |
agatgcaacccttcaaggcttggaagcttcattatgaattgaaaggtgtcatgagaagaatccttgagattttgaa |
44145095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 264
Target Start/End: Original strand, 29618 - 29743
Alignment:
| Q |
139 |
agatacaactcttcaaggcttttaagcttccctaggaattgcagggtgtgatgagaagaatcattgagattttgaacaaaactcaagtgaagtcttttca |
238 |
Q |
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||||||||||||| ||||||| ||||||| || |||||||| |||||||||||||||||| ||||||||||||| |||||||| || | || ||| |
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| T |
29618 |
agatacaactctttaaggcttggaagcttcattatgaattgcaaggtgtgatgagaagaatcgttgagattttgaattgtactcaagtcaatttttctca |
29717 |
T |
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| Q |
239 |
aagaagagagtcttgatagccactca |
264 |
Q |
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|||| ||||| |||||||||||||| |
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| T |
29718 |
aagatgagagctttgatagccactca |
29743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 264
Target Start/End: Complemental strand, 169174 - 169049
Alignment:
| Q |
139 |
agatacaactcttcaaggcttttaagcttccctaggaattgcagggtgtgatgagaagaatcattgagattttgaacaaaactcaagtgaagtcttttca |
238 |
Q |
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||||||||||||| ||||||| ||||||| || |||||||| |||||||||||||||||| ||||||||||||| |||||||| || | || ||| |
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| T |
169174 |
agatacaactctttaaggcttggaagcttcattatgaattgcaaggtgtgatgagaagaatcgttgagattttgaattgtactcaagtcaatttttctca |
169075 |
T |
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| Q |
239 |
aagaagagagtcttgatagccactca |
264 |
Q |
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|||| ||||| |||||||||||||| |
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| T |
169074 |
aagatgagagctttgatagccactca |
169049 |
T |
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