View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_low_19 (Length: 253)
Name: NF12984_low_19
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_low_19 |
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| [»] scaffold0230 (1 HSPs) |
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| [»] scaffold0511 (2 HSPs) |
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| [»] scaffold0144 (1 HSPs) |
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Alignment Details
Target: scaffold0230 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2565 - 2807
Alignment:
| Q |
1 |
agagaagtcatggctcccaacgattccggcaagtaatcaaagtatgctagaatcaaattttgtagggaggggacaactactaagccctgtaacatccggc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||| || |||||||| |||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
2565 |
agagaagtcatggctcccaatgattccggcaagtgattaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaacatccggc |
2664 |
T |
|
| Q |
101 |
tgtttccactgtagcacgaaatttccacttcacgaagggaagttagtttgttcatattacttggtaaaacaagttgtggacagccttggattacaagtct |
200 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |
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| T |
2665 |
tgtttccactgtagcacgaaattaccacttgacgaagggaagttagtttgttcatattacttggtaaaataagttgtggacaactttggattacaagtct |
2764 |
T |
|
| Q |
201 |
ctcaagactagccaagtctcccataccttctgacaaggatatt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2765 |
ctcaagactagccaagtctcccataccttctgacaaggatatt |
2807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18808458 - 18808219
Alignment:
| Q |
1 |
agagaagtcatggctcccaacgattccggcaagtaatcaaagtatgctagaatcaaattttgtagggaggggacaactactaagccctgtaacatccggc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||| || |||||||| |||| ||||||||||||||||||||| |||| ||||||||||||| ||||||| |
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| T |
18808458 |
agagaagtcatggctcccaatgattccggcaagtgattaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaatatccggc |
18808359 |
T |
|
| Q |
101 |
tgtttccactgtagcacgaaatttccacttcacgaagggaagttagtttgttcatattacttggtaaaacaagttgtggacagccttggattacaagtct |
200 |
Q |
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||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
18808358 |
tgtttccactgcagcacgaaattgccgcttgacgaagggaagttagtttgttcatattacttggtaaaacaagttgtggacaatcttcgattacaagtct |
18808259 |
T |
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| Q |
201 |
ctcaagactagccaagtctcccataccttctgacaaggat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
18808258 |
ctcaagactagccaagtctcccataccttctgacaaggat |
18808219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 18875458 - 18875216
Alignment:
| Q |
1 |
agagaagtcatggctcccaacgattccggcaagtaatcaaagtatgctagaatcaaattttgtagggaggggacaactactaagccctgtaacatccggc |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||||| |||||||||| |||| ||||||||| ||| |||||| |
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| T |
18875458 |
agagaagtcatggctcccaacgattcaggcaagtaatcaaagaatgatagagtcaaattttgaagggaggggataacttctaagccctctaatatccggt |
18875359 |
T |
|
| Q |
101 |
tgtttccactgtagcacgaaatttccacttcacgaagggaagttagtttgttcatattacttggtaaaacaagttgtggacagccttggattacaagtct |
200 |
Q |
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||||| || ||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
18875358 |
tgtttgcaaggtagcccgaaattgccacttgacgaagggaagttagtttgttcatattacttggtaaaacaagttgttcacaattttggattacaagtct |
18875259 |
T |
|
| Q |
201 |
ctcaagactagccaagtctcccataccttctgacaaggatatt |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18875258 |
ctcaagactagccaagtctcccataccttctgacaaggatatt |
18875216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7252 - 7491
Alignment:
| Q |
1 |
agagaagtcatggctcccaacgattccggcaagtaatcaaagtatgctagaatcaaattttgtagggaggggacaactactaagccctgtaacatccggc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||| ||||||| |||| ||||||||||||| ||||||| |
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| T |
7252 |
agagaagtcatggctcccaacgattcaggcaagtaatcaaagaatgatagagccaaattttgtagcgaggggataacttctaagccctgtaatatccggc |
7351 |
T |
|
| Q |
101 |
tgtttccactgtagcacgaaatttccacttcacgaagggaagttagtttgttcatattacttggtaaaacaagttgtggacagccttggattacaagtct |
200 |
Q |
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||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
7352 |
tgtttccactgcagcacgaaattgccgcttgacgaagggaagttagtttgttcatattacttggtaaaacaagttgtggacaatcttcgattacaagtct |
7451 |
T |
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| Q |
201 |
ctcaagactagccaagtctcccataccttctgacaaggat |
240 |
Q |
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| T |
7452 |
ctcaagactagccaagtctcccataccttctgacaaggat |
7491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3436 - 3194
Alignment:
| Q |
1 |
agagaagtcatggctcccaacgattccggcaagtaatcaaagtatgctagaatcaaattttgtagggaggggacaactactaagccctgtaacatccggc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||||| |||| ||||||||||||||||||||| |||| ||||||||||||| |||||| |
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| T |
3436 |
agagaagtcatggctcccaatgattccggcaagtgatcacagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaatatccggt |
3337 |
T |
|
| Q |
101 |
tgtttccactgtagcacgaaatttccacttcacgaagggaagttagtttgttcatattacttggtaaaacaagttgtggacagccttggattacaagtct |
200 |
Q |
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|||||| || | || ||||| | ||||| |||||||||||| || |||||||| |||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
3336 |
tgtttctaccggagtgggaaatattcacttgacgaagggaagtcagcttgttcattttacttggtaaaacaagttgtgaacaaccatggattacaagtct |
3237 |
T |
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| Q |
201 |
ctcaagactagccaagtctcccataccttctgacaaggatatt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3236 |
ctcaagactagccaagtctcccataccttctgacaaggatatt |
3194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4074 - 3832
Alignment:
| Q |
1 |
agagaagtcatggctcccaacgattccggcaagtaatcaaagtatgctagaatcaaattttgtagggaggggacaactactaagccctgtaacatccggc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||| ||||| ||||||| ||||||||||||||||||||| | || ||||||||||||| |||| || |
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| T |
4074 |
agagaagtcatggctcccaatgattctggcaggtaatgaaagtgtgctagactcaaattttgtagggaggggatatcttctaagccctgtaatatcctgc |
3975 |
T |
|
| Q |
101 |
tgtttccactgtagcacgaaatttccacttcacgaagggaagttagtttgttcatattacttggtaaaacaagttgtggacagccttggattacaagtct |
200 |
Q |
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||||||| ||| ||||| || | | ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
3974 |
tgtttccgctgaagcacctaaatgacccttgacgaagggaagttagcttgttcatattacttggtaaaacaagtcgtggacaaaaactgatttcaagtct |
3875 |
T |
|
| Q |
201 |
ctcaagactagccaagtctcccataccttctgacaaggatatt |
243 |
Q |
| |
|
|||||||| |||||| |||||||||||||| | |||||||||| |
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| T |
3874 |
ctcaagacaagccaattctcccataccttccgtcaaggatatt |
3832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 34050429 - 34050580
Alignment:
| Q |
23 |
attccggcaagtaatcaaagtatgctagaatcaaattttgtagggaggggacaactactaagccctgtaacatccggctgtttccactgtagcacgaaat |
122 |
Q |
| |
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|||| |||| ||||| ||||| ||||| | || |||||||||||||||| | | || || | |||| ||| || | | ||||||| || ||||| |||| |
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| T |
34050429 |
attctggcaggtaatgaaagtgtgctaaagtcgaattttgtagggagggaatatcttcttaaccctataatattctgatgtttcctttgaagcacaaaat |
34050528 |
T |
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| Q |
123 |
ttccacttcacgaagggaagttagtttgttcatattacttggtaaaacaagt |
174 |
Q |
| |
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| ||||| |||||||||| |||| || |||||||||||||||||||||||| |
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|
| T |
34050529 |
tgtcacttgacgaagggaaattagctttttcatattacttggtaaaacaagt |
34050580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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