View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_low_20 (Length: 242)
Name: NF12984_low_20
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_low_20 |
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| [»] scaffold0511 (2 HSPs) |
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| [»] scaffold0230 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 18875615 - 18875839
Alignment:
| Q |
1 |
cgttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcaccgacactttt |
100 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18875615 |
cgttcctgaattggagttaattgcagaagacacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcaccgacacattt |
18875714 |
T |
|
| Q |
101 |
cttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattattatcagtgtc |
200 |
Q |
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|||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18875715 |
cttttaaggcgtatcccgatgtctcacacttacaccgaaccgacgtatgtagttacattgaatcacttgacttctattttctcaaattattatcagtgtc |
18875814 |
T |
|
| Q |
201 |
taatgtttgtgttagtatcgtgtct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
18875815 |
taatgtttgtgttagtatcgtgtct |
18875839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 18808615 - 18808815
Alignment:
| Q |
1 |
cgttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcaccgacactttt |
100 |
Q |
| |
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|||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
18808615 |
cgttcctgaattggagttaattacaatatacacatactatagtaatatactgaatcccttgcttatttcatcttgttctttatgtagcaccaacactttt |
18808714 |
T |
|
| Q |
101 |
cttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattattatcagtgtc |
200 |
Q |
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| T |
18808715 |
gttttaaggcttttcc-ggtgtctcacacttacacgacaccgacaaatgtagttacattaaatcacttgacttctattttctcaaattattatttgtgtc |
18808813 |
T |
|
| Q |
201 |
ta |
202 |
Q |
| |
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|| |
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| T |
18808814 |
ta |
18808815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 18790571 - 18790609
Alignment:
| Q |
155 |
acattgaatcacttgacttctattttttcaaattattat |
193 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
18790571 |
acattgaatcacttgacttctattttctcaaattattat |
18790609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3593 - 3815
Alignment:
| Q |
1 |
cgttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcaccgacactttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3593 |
cgttcctgaattggagttaattgcaaaaaaaacatactagagtaatatactgaatcccttgcttatttcatct--gtctttatgtagcaccgacactttt |
3690 |
T |
|
| Q |
101 |
cttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattattatcagtgtc |
200 |
Q |
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|||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3691 |
cttttaaggcttatcccgatgtctcacacttacaccggaacgacgtatgtagttacattgaatcacttgacttctattttctcaaattattatcagtgtc |
3790 |
T |
|
| Q |
201 |
taatgtttgtgttagtatcgtgtct |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3791 |
taatgtttgtgttagtatcgtgtct |
3815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 7095 - 6895
Alignment:
| Q |
1 |
cgttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcaccgacactttt |
100 |
Q |
| |
|
||||||| |||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
7095 |
cgttcctaaattggagttaattacaatatacacatactatagtattatactgaatcccttgcttatttcatcttgttctttatgtagcaccaacactttt |
6996 |
T |
|
| Q |
101 |
cttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattattatcagtgtc |
200 |
Q |
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||||||||||| ||| | | |||||||||||||| ||| || ||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
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| T |
6995 |
gttttaaggcttttcc-ggtttctcacacttacacaacaccaacaaatgtagttacattaaatcacttgacttctattttctcaaattattatttgtgtc |
6897 |
T |
|
| Q |
201 |
ta |
202 |
Q |
| |
|
|| |
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|
| T |
6896 |
ta |
6895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2407 - 2207
Alignment:
| Q |
1 |
cgttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcaccgacactttt |
100 |
Q |
| |
|
|||||||||||||||||||||| | | | ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |
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| T |
2407 |
cgttcctgaattggagttaattaccatatacacctaccatagtaatatactgaatcccttgcttatttcatcttgttctttatgtaggaccaacactttt |
2308 |
T |
|
| Q |
101 |
cttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattattatcagtgtc |
200 |
Q |
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||||||||||| ||| | |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
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| T |
2307 |
gttttaaggcttttcc-ggtgtctcacacttacacgacaccgacaaatgtagttacattaaatcacttgacttctattttctcaaattattatttgtgtc |
2209 |
T |
|
| Q |
201 |
ta |
202 |
Q |
| |
|
|| |
|
|
| T |
2208 |
ta |
2207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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