View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12984_low_21 (Length: 211)
Name: NF12984_low_21
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 42837199 - 42837391
Alignment:
| Q |
1 |
gagatggagacagatgaaggtataaacagtcttaaagctcgcatagaaactcaacacaagtcgcacatggacatgctttcttctgtacaatctgttatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42837199 |
gagatggagacagatgaaggtataaacagtcttaaagctcgcatagaaactcaacacaagtcgcacatgtacatgctttcttctgtacaatctgttatac |
42837298 |
T |
|
| Q |
101 |
ctaattttgtttcttctctcgacctttctctcaaagttctctcttctttcaaccaccgtccttttgctcctacacctcctttaaccaatttca |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42837299 |
ctaattttgtttcttctctcgacctttctctcaaagttctctcttctttcaaccaccgtccttttgctcctacacctcctttaaccaatttca |
42837391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 43915079 - 43914938
Alignment:
| Q |
35 |
aagctcgcatagaaactcaacacaagtcgcacatggacatgctttcttctgtacaatctgttatacctaattttgtttcttctctcgacctttctctcaa |
134 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| || |
|
|
| T |
43915079 |
aagctcgcatagaaacccaacacaagtcacacatggacatgctttcttctgtacaatccgttatacctaatcttgtttcttctcttgacctttctctgaa |
43914980 |
T |
|
| Q |
135 |
agttctctcttctttcaaccaccgtccttttgctcctacacc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43914979 |
agttctctcttctttcaaccaccgtccttttgctcctacacc |
43914938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University