View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_low_6 (Length: 627)
Name: NF12984_low_6
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_low_6 |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 24893518 - 24893983
Alignment:
| Q |
1 |
ctgcgaagctcgatgcactaaagcctccacatacaagatttgaaaaggggtgtaatgttgtggggtgtaatgaaactcattttagagtttttgatgagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893518 |
ctgcgaagctcgatgcactaaagcctccacatacaagatttgaaaaggggtgtaatgttgtggggtgtaatgaaactcattttagagtttttgatgagtg |
24893617 |
T |
|
| Q |
101 |
gtaagtagaagtagaaggtgaaagtaattttctgttaatttaacatgctatgaaaattcaaatgatagaaacgagaaaagacacaagtaaagagggcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893618 |
gtaagtagaagtagaaggtgaaagtaattttctgttaatttaacatgctatgaaaattcaaatgatagaaacgagaaaagacacaagtaaagagggcaac |
24893717 |
T |
|
| Q |
201 |
acttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893718 |
acttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctca |
24893817 |
T |
|
| Q |
301 |
cattagaaaatatactattcgacctagtatcccccctttggtttgccacttcaccaacttccccttccgaagaaagatccatcaaaagatcccatgttga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893818 |
cattagaaaatatactattcgacctagtatcccccctttggtttgccacttcaccaacttccccttccgaagaaagatccatcaaaagatcccatgttga |
24893917 |
T |
|
| Q |
401 |
gcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc |
466 |
Q |
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| T |
24893918 |
gcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc |
24893983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 200 - 332
Target Start/End: Original strand, 24922635 - 24922767
Alignment:
| Q |
200 |
cacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | | |||||||||| |
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| T |
24922635 |
cacttactcagaaattccttcatatacagttccaaatgaaccacggcccaaaagctcacccttttgccaactcccaggagtaattacaggcttcaatctc |
24922734 |
T |
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| Q |
300 |
acattagaaaatatactattcgacctagtatcc |
332 |
Q |
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| T |
24922735 |
acattaggagatatactattcgacctagtatcc |
24922767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 200 - 332
Target Start/End: Original strand, 24998725 - 24998857
Alignment:
| Q |
200 |
cacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | | |||||||||| |
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| T |
24998725 |
cacttactcagaaattccttcatatacagttccaaatgaaccacggcccaaaagctcacccttttgccaactcccaggagtaattacaggcttcaatctc |
24998824 |
T |
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| Q |
300 |
acattagaaaatatactattcgacctagtatcc |
332 |
Q |
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||||||| | ||||||||||||||||||||||| |
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| T |
24998825 |
acattaggagatatactattcgacctagtatcc |
24998857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 202 - 363
Target Start/End: Original strand, 24905545 - 24905703
Alignment:
| Q |
202 |
cttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctcac |
301 |
Q |
| |
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|||||| ||||||||||||||||||| |||||| ||||| | |||||||| |||||||||| ||||||||| |||||||||| || | ||||||||| |
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| T |
24905545 |
cttactgagaaattccttcatatacaaatccaaacgaaccactacccaaaagttcacccttttcccaactcccaggagtaataactggcatcaatctcag |
24905644 |
T |
|
| Q |
302 |
attagaaaatatactattcgacctagtatcccccctttggtttgccacttcaccaacttccc |
363 |
Q |
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|||||||||| ||| |||||| | ||||| ||||||||||| |||||||||||||||||| |
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| T |
24905645 |
attagaaaatgtacaattcgagcaagtat---ccctttggtttcccacttcaccaacttccc |
24905703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 609
Target Start/End: Original strand, 24894081 - 24894126
Alignment:
| Q |
564 |
ggagctaaatccctcagtatatcccacgtcgaacacatgtcatcca |
609 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
24894081 |
ggagctaaatctctcagtatatcccacttcgaacacatgtcatcca |
24894126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 24904739 - 24904784
Alignment:
| Q |
161 |
aatgatagaaacgagaaaagacacaagtaaagagggcaacacttac |
206 |
Q |
| |
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|||| ||||||||| | |||| |||||||||||||||||||||||| |
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| T |
24904739 |
aatggtagaaacgaaataagatacaagtaaagagggcaacacttac |
24904784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 609
Target Start/End: Original strand, 24999047 - 24999092
Alignment:
| Q |
564 |
ggagctaaatccctcagtatatcccacgtcgaacacatgtcatcca |
609 |
Q |
| |
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||||| ||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
24999047 |
ggagcaaaatccctcagaatatcccacgttgaacacgtgtcatcca |
24999092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 200 - 332
Target Start/End: Original strand, 35695 - 35834
Alignment:
| Q |
200 |
cacttactcagaaattcctt-catatacagttccaaatgaaccgcggccc-aaaagctcaccc-ttttgccaactcccgggagtaa--taagtgacttc- |
293 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||||| || |||||| |
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| T |
35695 |
cacttactcagaaattccttacatatacagttccaaatgaaccacggcccaaaaagctcaccctttttgccaactcccaggagtaatttacaggacttca |
35794 |
T |
|
| Q |
294 |
aatctcacatt-agaaaatatactattcgacctagtatcc |
332 |
Q |
| |
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||||||||||| || | ||||||||||||||||||||||| |
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| T |
35795 |
aatctcacattaaggagatatactattcgacctagtatcc |
35834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 33023027 - 33023096
Alignment:
| Q |
199 |
acacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgcca |
268 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||||||| | ||||||| ||||||||||||| |
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|
| T |
33023027 |
acacttactcagaaattccttcatagacagatccaaatgaaccaccccccaaaaagccacccttttgcca |
33023096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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